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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.514364 (17 seq.)
>W1910154721
BILZ01000043
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
51831
51756
-
His
GTG
[ENA]
¡û
>W1810608892
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
101174
101099
-
His
GTG
[ENA]
¡û
>W1810608935
QGTQ01000047
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
27062
26987
-
His
GTG
[ENA]
¡û
>PL201001166
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
1553090
1553015
-
His
GTG
[ENA]
¡û
>PL201001186
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
900079
900004
-
His
GTG
[ENA]
¡û
>W2010087656
BILZ01000043
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
51831
51756
-
His
GTG
[ENA]
¡û
>W2010716491
JACHXK010000001
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
1004528
1004453
-
His
GTG
[ENA]
¡û
>W2010716577
JACHXK010000040
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
783
858
+
His
GTG
[ENA]
¡û
>W2012432390
WSTC01000044
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
1131
1206
+
His
GTG
[ENA]
¡û
>W2012432402
WSTC01000051
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
26971
26896
-
His
GTG
[ENA]
¡û
>W2110285550
JACXZA010000001
Bacillota
Paenibacillus sp. PR3 [JACXZA]
1478
1553
+
His
GTG
[ENA]
¡û
>W2110285586
JACXZA010000009
Bacillota
Paenibacillus sp. PR3 [JACXZA]
202352
202277
-
His
GTG
[ENA]
¡û
>C231298468
CP091430
Bacillota
Paenibacillus sp. PHS-Z3 [CP091430]
1282605
1282680
+
His
GTG
-
¡û
>W10126263
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
259829
259754
-
His
GTG
[ENA]
¡û
>W10126313
AEDD01000006
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
94899
94824
-
His
GTG
[ENA]
¡û
>W11133524
AEDD01000003
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
259829
259754
-
His
GTG
[ENA]
¡û
>W11133574
AEDD01000006
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
94899
94824
-
His
GTG
[ENA]
¡û
Identical group No.667176 (1 seq.)
>PL201001266
CP058266
Bacillota
Bacillus megaterium BIM B-1314D plasmid:pBM-Cp-1-4 [CP058266]
100183
100108
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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