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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = GTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307317 (10 seq.)
>W1711090308
LTAQ01000004
Bacillota
Bacillus gaemokensis [LTAQ]
62403
62327
-
Asn
GTT
[ENA]
¡û
>W141789736
JOTM01000011
Bacillota
Bacillus gaemokensis [JOTM]
106128
106052
-
Asn
GTT
[ENA]
¡û
>W1911299586
NTUQ01000021
Bacillota
Bacillus cereus AFS015717 [NTUQ]
94879
94955
+
Asn
GTT
[ENA]
¡û
>W1911324504
NUIL01000015
Bacillota
Bacillus cereus AFS050027 [NUIL]
100995
100919
-
Asn
GTT
[ENA]
¡û
>W1911368921
NVGU01000024
Bacillota
Bacillus mycoides AFS075998 [NVGU]
65885
65961
+
Asn
GTT
[ENA]
¡û
>W1911380517
NVND01000045
Bacillota
Bacillus cereus AFS091573 [NVND]
138153
138229
+
Asn
GTT
[ENA]
¡û
>PL201000356
CP032366
Bacillota
Bacillus wiedmannii SR52 plasmid:unnamed1 [CP032366]
123615
123691
+
Asn
GTT
[ENA]
¡û
>W2011120105
NVGU01000024
Bacillota
Bacillus mycoides AFS075998 [NVGU]
65885
65961
+
Asn
GTT
[ENA]
¡û
>W1511536591
JYPL01000109
Bacillota
Bacillus cereus HWW 274-2 [JYPL]
124240
124164
-
Asn
GTT
[ENA]
¡û
>W1610924652
LTAQ01000004
Bacillota
Bacillus gaemokensis [LTAQ]
62403
62327
-
Asn
GTT
[ENA]
¡û
Identical group No.360062 (24 seq.)
>PL201000488
CP040853
Bacillota
Lactobacillus murinus V10 plasmid:unnamed [CP040853]
18719
18644
-
Asn
GTT
[ENA]
¡û
>W2012067006
VKBS01000009
Bacillota
Lactobacillus murinus VM2V3 [VKBS]
25905
25980
+
Asn
GTT
[ENA]
¡û
>W2012067050
VKBT01000007
Bacillota
Lactobacillus murinus VM2V2 [VKBT]
25905
25980
+
Asn
GTT
[ENA]
¡û
>W2012067111
VKBU01000037
Bacillota
Lactobacillus murinus VM2F3 [VKBU]
14403
14328
-
Asn
GTT
[ENA]
¡û
>W2012067160
VKBV01000035
Bacillota
Lactobacillus murinus VM1V3 [VKBV]
4734
4809
+
Asn
GTT
[ENA]
¡û
>W2012067213
VKBW01000037
Bacillota
Lactobacillus murinus VM1V2 [VKBW]
4735
4810
+
Asn
GTT
[ENA]
¡û
>W2012067245
VKBX01000010
Bacillota
Lactobacillus murinus VM1V1 [VKBX]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067308
VKBY01000029
Bacillota
Lactobacillus murinus VM1F3 [VKBY]
9207
9282
+
Asn
GTT
[ENA]
¡û
>W2012067344
VKBZ01000010
Bacillota
Lactobacillus murinus VM1F2 [VKBZ]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067414
VKCA01000038
Bacillota
Lactobacillus murinus VM1F1 [VKCA]
14403
14328
-
Asn
GTT
[ENA]
¡û
>W2012067540
VKCD01000008
Bacillota
Lactobacillus murinus SM2F2 [VKCD]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067589
VKCE01000010
Bacillota
Lactobacillus murinus SM1F2 [VKCE]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067637
VKCF01000010
Bacillota
Lactobacillus murinus SM1F1 [VKCF]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067687
VKCG01000009
Bacillota
Lactobacillus murinus 3V2P2 [VKCG]
25905
25980
+
Asn
GTT
[ENA]
¡û
>W2012067735
VKCH01000009
Bacillota
Lactobacillus murinus 3V1P2 [VKCH]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067794
VKCI01000028
Bacillota
Lactobacillus murinus 3V1P1 [VKCI]
9207
9282
+
Asn
GTT
[ENA]
¡û
>W2012067837
VKCJ01000009
Bacillota
Lactobacillus murinus 3S2P1 [VKCJ]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067886
VKCK01000010
Bacillota
Lactobacillus murinus 2V1P2 [VKCK]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012067952
VKCL01000028
Bacillota
Lactobacillus murinus 2V1P1 [VKCL]
14403
14328
-
Asn
GTT
[ENA]
¡û
>W2012067989
VKCM01000009
Bacillota
Lactobacillus murinus 2S2P1 [VKCM]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012068042
VKCN01000009
Bacillota
Lactobacillus murinus 1V2P2 [VKCN]
25905
25980
+
Asn
GTT
[ENA]
¡û
>W2012068090
VKCO01000008
Bacillota
Lactobacillus murinus 1V1P2 [VKCO]
26658
26733
+
Asn
GTT
[ENA]
¡û
>W2012068149
VKCP01000028
Bacillota
Lactobacillus murinus 1V1P1 [VKCP]
9207
9282
+
Asn
GTT
[ENA]
¡û
>W2012068192
VKCQ01000010
Bacillota
Lactobacillus murinus 1S2P1 [VKCQ]
26658
26733
+
Asn
GTT
[ENA]
¡û
Identical group No.540819 (1 seq.)
>PL201000747
CP048288
Bacillota
Paenibacillus sp. 14171R-81 plasmid:unnamed2 [CP048288]
93584
93509
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK