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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = TAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83861 (2 seq.)
>W1810608956
QGTQ01000057
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
8236
8324
+
Leu
TAA
[ENA]
¡û
>PL201001118
CP054609
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed1 [CP054609]
243549
243461
-
Leu
TAA
[ENA]
¡û
Identical group No.85511 (1 seq.)
>PL201000770
CP048891
Bacillota
Bacillus megaterium Mes11 plasmid:pBMG8 [CP048891]
11136
11224
+
Leu
TAA
[ENA]
¡û
Identical group No.85512 (4 seq.)
>PL201001007
CP053353
Bacillota
Staphylococcus aureus 16405 plasmid:unnamed [CP053353]
1223969
1224057
+
Leu
TAA
[ENA]
¡û
>C231064050
CP053353
Bacillota
Staphylococcus aureus 16405 [CP053353]
1223969
1224057
+
Leu
TAA
-
¡û
>C241078096
CP043302
Bacillota
Staphylococcus aureus 16445 [CP043302]
609798
609710
-
Leu
TAA
-
¡û
>C241157569
CP053639
Bacillota
Staphylococcus aureus 14732 [CP053639]
1275505
1275593
+
Leu
TAA
-
¡û
Identical group No.188318 (1 seq.)
>PL201000875
CP051163
Bacillota
Geobacillus subterraneus CPW16 plasmid:pBsrF12 [CP051163]
6834
6752
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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