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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = TAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360061 (24 seq.)
>PL201000486
CP040853
Bacillota
Lactobacillus murinus V10 plasmid:unnamed [CP040853]
19154
19076
-
Ile
TAT
[ENA]
¡û
>W2012067004
VKBS01000009
Bacillota
Lactobacillus murinus VM2V3 [VKBS]
25470
25548
+
Ile
TAT
[ENA]
¡û
>W2012067048
VKBT01000007
Bacillota
Lactobacillus murinus VM2V2 [VKBT]
25470
25548
+
Ile
TAT
[ENA]
¡û
>W2012067109
VKBU01000037
Bacillota
Lactobacillus murinus VM2F3 [VKBU]
14838
14760
-
Ile
TAT
[ENA]
¡û
>W2012067158
VKBV01000035
Bacillota
Lactobacillus murinus VM1V3 [VKBV]
4299
4377
+
Ile
TAT
[ENA]
¡û
>W2012067211
VKBW01000037
Bacillota
Lactobacillus murinus VM1V2 [VKBW]
4300
4378
+
Ile
TAT
[ENA]
¡û
>W2012067243
VKBX01000010
Bacillota
Lactobacillus murinus VM1V1 [VKBX]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067306
VKBY01000029
Bacillota
Lactobacillus murinus VM1F3 [VKBY]
8772
8850
+
Ile
TAT
[ENA]
¡û
>W2012067342
VKBZ01000010
Bacillota
Lactobacillus murinus VM1F2 [VKBZ]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067412
VKCA01000038
Bacillota
Lactobacillus murinus VM1F1 [VKCA]
14838
14760
-
Ile
TAT
[ENA]
¡û
>W2012067538
VKCD01000008
Bacillota
Lactobacillus murinus SM2F2 [VKCD]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067587
VKCE01000010
Bacillota
Lactobacillus murinus SM1F2 [VKCE]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067635
VKCF01000010
Bacillota
Lactobacillus murinus SM1F1 [VKCF]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067685
VKCG01000009
Bacillota
Lactobacillus murinus 3V2P2 [VKCG]
25470
25548
+
Ile
TAT
[ENA]
¡û
>W2012067733
VKCH01000009
Bacillota
Lactobacillus murinus 3V1P2 [VKCH]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067792
VKCI01000028
Bacillota
Lactobacillus murinus 3V1P1 [VKCI]
8772
8850
+
Ile
TAT
[ENA]
¡û
>W2012067835
VKCJ01000009
Bacillota
Lactobacillus murinus 3S2P1 [VKCJ]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067884
VKCK01000010
Bacillota
Lactobacillus murinus 2V1P2 [VKCK]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012067950
VKCL01000028
Bacillota
Lactobacillus murinus 2V1P1 [VKCL]
14838
14760
-
Ile
TAT
[ENA]
¡û
>W2012067987
VKCM01000009
Bacillota
Lactobacillus murinus 2S2P1 [VKCM]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012068040
VKCN01000009
Bacillota
Lactobacillus murinus 1V2P2 [VKCN]
25470
25548
+
Ile
TAT
[ENA]
¡û
>W2012068088
VKCO01000008
Bacillota
Lactobacillus murinus 1V1P2 [VKCO]
26223
26301
+
Ile
TAT
[ENA]
¡û
>W2012068147
VKCP01000028
Bacillota
Lactobacillus murinus 1V1P1 [VKCP]
8772
8850
+
Ile
TAT
[ENA]
¡û
>W2012068190
VKCQ01000010
Bacillota
Lactobacillus murinus 1S2P1 [VKCQ]
26223
26301
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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