This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = TCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4053 (87 seq.)
>PL173000088
CP007647
Firmicutes
Lactobacillus salivarius JCM1046 plasmid:pMP1046A
18574
18481
-
SeC(p)
TCA
[ENA]
¡û
>PL173000208
LT604075
Firmicutes
Lactobacillus salivarius plasmid:II
161666
161573
-
SeC(p)
TCA
[ENA]
¡û
>W1930011879
LXYX01000133
Bacillota
Lactobacillus salivarius KLW010 [LXYX]
15281
15184
-
SeC
TCA
[ENA]
¡û
>W1930011881
LXYY01000016
Bacillota
Lactobacillus salivarius KLW009 [LXYY]
18044
18141
+
SeC
TCA
[ENA]
¡û
>W1930011883
LXYZ01000078
Bacillota
Lactobacillus salivarius KLW008 [LXYZ]
18044
18141
+
SeC
TCA
[ENA]
¡û
>W1930011886
LXZA01000010
Bacillota
Lactobacillus salivarius KLW007 [LXZA]
15028
14931
-
SeC
TCA
[ENA]
¡û
>W1930011887
LXZB01000011
Bacillota
Lactobacillus salivarius KLW006 [LXZB]
15024
14927
-
SeC
TCA
[ENA]
¡û
>W1930011890
LXZC01000044
Bacillota
Lactobacillus salivarius KLW005 [LXZC]
63718
63815
+
SeC
TCA
[ENA]
¡û
>W1930011892
LXZF01000031
Bacillota
Lactobacillus salivarius KLW002 [LXZF]
5437
5340
-
SeC
TCA
[ENA]
¡û
>W1930011896
LXZH01000046
Bacillota
Lactobacillus salivarius KLF007 [LXZH]
5192
5095
-
SeC
TCA
[ENA]
¡û
>W1930011897
LXZJ01000039
Bacillota
Lactobacillus salivarius KLF005 [LXZJ]
14999
14902
-
SeC
TCA
[ENA]
¡û
>W1930011903
LXZO01000145
Bacillota
Lactobacillus salivarius KLA006 [LXZO]
58602
58699
+
SeC
TCA
[ENA]
¡û
>W1930011906
LXZP01000089
Bacillota
Lactobacillus salivarius KLA005 [LXZP]
5074
4977
-
SeC
TCA
[ENA]
¡û
>W1930011908
LXZQ01000021
Bacillota
Lactobacillus salivarius KLA004 [LXZQ]
35685
35782
+
SeC
TCA
[ENA]
¡û
>W1930011909
LXZR01000023
Bacillota
Lactobacillus salivarius KLA003 [LXZR]
5076
4979
-
SeC
TCA
[ENA]
¡û
>W1930011911
LXZS01000011
Bacillota
Lactobacillus salivarius KLA002 [LXZS]
5075
4978
-
SeC
TCA
[ENA]
¡û
>W1930011915
LXZT01000097
Bacillota
Lactobacillus salivarius KLA001 [LXZT]
5073
4976
-
SeC
TCA
[ENA]
¡û
>W1930020853
NDYW01000014
Bacillota
Lactobacillus salivarius L28 [NDYW]
7035
6938
-
SeC
TCA
[ENA]
¡û
>W1830015475
QRMK01000009
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
30379
30476
+
SeC
TCA
[ENA]
¡û
>W1830017736
QSLH01000010
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
18937
19034
+
SeC
TCA
[ENA]
¡û
>PL203000088
CP047413
Bacillota
Lactobacillus salivarius 2D plasmid:unnamed1 [CP047413]
69637
69734
+
SeC
TCA
[ENA]
¡û
>W2030013124
JABAFL010000005
Bacillota
Lactobacillus salivarius WCA-389-WT-5E [JABAFL]
68987
69084
+
SeC
TCA
[ENA]
¡û
>W2030014945
JACBJR010000071
Bacillota
Lactobacillus salivarius FFIG58 [JACBJR]
3976
3879
-
SeC
TCA
[ENA]
¡û
>W2030014946
JACBJS010000006
Bacillota
Lactobacillus salivarius FFIG23 [JACBJS]
18238
18335
+
SeC
TCA
[ENA]
¡û
>W2030014947
JACBJT010000234
Bacillota
Lactobacillus salivarius FFIG53 [JACBJT]
178
275
+
SeC
TCA
[ENA]
¡û
>W2030014948
JACBJU010000360
Bacillota
Lactobacillus salivarius FFIG60 [JACBJU]
147
241
+
SeC
TCA
[ENA]
¡û
>W2030014949
JACBJV010000110
Bacillota
Lactobacillus salivarius FFIG63 [JACBJV]
5494
5591
+
SeC
TCA
[ENA]
¡û
>W2030014950
JACBJW010000446
Bacillota
Lactobacillus salivarius FFIG79 [JACBJW]
1366
1269
-
SeC
TCA
[ENA]
¡û
>W2030014951
JACBJX010000155
Bacillota
Lactobacillus salivarius FFIG124 [JACBJX]
6683
6586
-
SeC
TCA
[ENA]
¡û
>W2030014952
JACBJY010000130
Bacillota
Lactobacillus salivarius FFIG130 [JACBJY]
2406
2503
+
SeC
TCA
[ENA]
¡û
>W2030018209
LXYX01000133
Bacillota
Lactobacillus salivarius KLW010 [LXYX]
15281
15184
-
SeC
TCA
[ENA]
¡û
>W2030018211
LXYY01000016
Bacillota
Lactobacillus salivarius KLW009 [LXYY]
18044
18141
+
SeC
TCA
[ENA]
¡û
>W2030018213
LXYZ01000078
Bacillota
Lactobacillus salivarius KLW008 [LXYZ]
18044
18141
+
SeC
TCA
[ENA]
¡û
>W2030018216
LXZA01000010
Bacillota
Lactobacillus salivarius KLW007 [LXZA]
15028
14931
-
SeC
TCA
[ENA]
¡û
>W2030018217
LXZB01000011
Bacillota
Lactobacillus salivarius KLW006 [LXZB]
15024
14927
-
SeC
TCA
[ENA]
¡û
>W2030018220
LXZC01000044
Bacillota
Lactobacillus salivarius KLW005 [LXZC]
63718
63815
+
SeC
TCA
[ENA]
¡û
>W2030018222
LXZF01000031
Bacillota
Lactobacillus salivarius KLW002 [LXZF]
5437
5340
-
SeC
TCA
[ENA]
¡û
>W2030018226
LXZH01000046
Bacillota
Lactobacillus salivarius KLF007 [LXZH]
5192
5095
-
SeC
TCA
[ENA]
¡û
>W2030018227
LXZJ01000039
Bacillota
Lactobacillus salivarius KLF005 [LXZJ]
14999
14902
-
SeC
TCA
[ENA]
¡û
>W2030018233
LXZO01000145
Bacillota
Lactobacillus salivarius KLA006 [LXZO]
58602
58699
+
SeC
TCA
[ENA]
¡û
>W2030018236
LXZP01000089
Bacillota
Lactobacillus salivarius KLA005 [LXZP]
5074
4977
-
SeC
TCA
[ENA]
¡û
>W2030018238
LXZQ01000021
Bacillota
Lactobacillus salivarius KLA004 [LXZQ]
35685
35782
+
SeC
TCA
[ENA]
¡û
>W2030018239
LXZR01000023
Bacillota
Lactobacillus salivarius KLA003 [LXZR]
5076
4979
-
SeC
TCA
[ENA]
¡û
>W2030018241
LXZS01000011
Bacillota
Lactobacillus salivarius KLA002 [LXZS]
5075
4978
-
SeC
TCA
[ENA]
¡û
>W2030018245
LXZT01000097
Bacillota
Lactobacillus salivarius KLA001 [LXZT]
5073
4976
-
SeC
TCA
[ENA]
¡û
>W2030025829
NDYW01000014
Bacillota
Lactobacillus salivarius L28 [NDYW]
7035
6938
-
SeC
TCA
[ENA]
¡û
>W2030048036
VCMO01000005
Bacillota
Lactobacillus salivarius C2 [VCMO]
26250
26153
-
SeC
TCA
[ENA]
¡û
>W2030051932
VSTM01000003
Bacillota
Lactobacillus salivarius NT15_1 [VSTM]
16753
16850
+
SeC
TCA
[ENA]
¡û
>W2030051933
VSTN01000006
Bacillota
Lactobacillus salivarius JSWX5_1 [VSTN]
61027
60930
-
SeC
TCA
[ENA]
¡û
>W2030051935
VSTS01000004
Bacillota
Lactobacillus salivarius FZJTZ69_1 [VSTS]
176526
176429
-
SeC
TCA
[ENA]
¡û
>W2030051936
VSTT01000002
Bacillota
Lactobacillus salivarius FZJTZ64M3 [VSTT]
158117
158214
+
SeC
TCA
[ENA]
¡û
>W2030051938
VSTU01000003
Bacillota
Lactobacillus salivarius FZJTZ28M4.scaf [VSTU]
39290
39387
+
SeC
TCA
[ENA]
¡û
>W2030051939
VSTV01000002
Bacillota
Lactobacillus salivarius FZJTZ27M6_2 [VSTV]
39228
39325
+
SeC
TCA
[ENA]
¡û
>W2030051941
VSTX01000003
Bacillota
Lactobacillus salivarius FZJTZ13M4 [VSTX]
123104
123007
-
SeC
TCA
[ENA]
¡û
>W2030051946
VSUK01000003
Bacillota
Lactobacillus salivarius FXJCJ7_2 [VSUK]
144248
144151
-
SeC
TCA
[ENA]
¡û
>W2030051955
VSUW01000005
Bacillota
Lactobacillus salivarius F_SD_HZ_D3_L_5 [VSUW]
76988
77085
+
SeC
TCA
[ENA]
¡û
>W2030051957
VSUZ01000002
Bacillota
Lactobacillus salivarius FNMGHLBE2_L7 [VSUZ]
226604
226701
+
SeC
TCA
[ENA]
¡û
>W2030051958
VSVC01000010
Bacillota
Lactobacillus salivarius FJSWX_34J_L5 [VSVC]
59809
59712
-
SeC
TCA
[ENA]
¡û
>W2030051960
VSVE01000003
Bacillota
Lactobacillus salivarius FJLHD9M1 [VSVE]
183066
183163
+
SeC
TCA
[ENA]
¡û
>W2030051961
VSVG01000011
Bacillota
Lactobacillus salivarius FJLHD4M1 [VSVG]
5117
5020
-
SeC
TCA
[ENA]
¡û
>W2030051964
VSVH01000005
Bacillota
Lactobacillus salivarius FJLHD32M4 [VSVH]
55732
55635
-
SeC
TCA
[ENA]
¡û
>W2030051965
VSVI01000011
Bacillota
Lactobacillus salivarius FJLHD2M8 [VSVI]
5121
5024
-
SeC
TCA
[ENA]
¡û
>W2030051967
VSVJ01000004
Bacillota
Lactobacillus salivarius FJLHD27M4 [VSVJ]
59706
59609
-
SeC
TCA
[ENA]
¡û
>W2030051968
VSVK01000003
Bacillota
Lactobacillus salivarius FJLHD25M7 [VSVK]
144287
144190
-
SeC
TCA
[ENA]
¡û
>W2030051969
VSVL01000013
Bacillota
Lactobacillus salivarius FJLHD24M1 [VSVL]
31583
31680
+
SeC
TCA
[ENA]
¡û
>W2030051970
VSVM01000003
Bacillota
Lactobacillus salivarius FJLHD18M1 [VSVM]
23159
23062
-
SeC
TCA
[ENA]
¡û
>W2030051972
VSVO01000013
Bacillota
Lactobacillus salivarius FJLHD14M6 [VSVO]
5094
4997
-
SeC
TCA
[ENA]
¡û
>W2030051973
VSVR01000010
Bacillota
Lactobacillus salivarius FHNXY27_L3 [VSVR]
61180
61277
+
SeC
TCA
[ENA]
¡û
>W2030051974
VSVU01000013
Bacillota
Lactobacillus salivarius FGDLZ35_2.scaf [VSVU]
41396
41493
+
SeC
TCA
[ENA]
¡û
>W2030051976
VSVW01000018
Bacillota
Lactobacillus salivarius FCQHC8_L1 [VSVW]
12345
12248
-
SeC
TCA
[ENA]
¡û
>W2030051977
VSWB01000005
Bacillota
Lactobacillus salivarius 6_2 [VSWB]
51901
51998
+
SeC
TCA
[ENA]
¡û
>W10124266
AEBA01000066
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
12403
12310
-
SeC
TCA
[ENA]
¡û
>W1730023705
LXZG01000083
Bacillota
Ligilactobacillus salivarius [LXZG]
18044
18137
+
SeC(p)
TCA
[ENA]
¡û
>W1730034078
MSCR01000032
Bacillota
Ligilactobacillus salivarius [MSCR]
25634
25541
-
SeC(p)
TCA
[ENA]
¡û
>W1730038491
NBDX01000033
Bacillota
Ligilactobacillus salivarius [NBDX]
134530
134437
-
SeC(p)
TCA
[ENA]
¡û
>W1730038492
NBEB01000081
Bacillota
Ligilactobacillus salivarius [NBEB]
4069
3976
-
SeC(p)
TCA
[ENA]
¡û
>W1730038493
NBEC01000072
Bacillota
Ligilactobacillus salivarius [NBEC]
4069
3976
-
SeC(p)
TCA
[ENA]
¡û
>W1730038494
NBED01000042
Bacillota
Ligilactobacillus salivarius [NBED]
138856
138763
-
SeC(p)
TCA
[ENA]
¡û
>W1730038496
NBEJ01000025
Bacillota
Ligilactobacillus salivarius [NBEJ]
5537
5444
-
SeC(p)
TCA
[ENA]
¡û
>W1730038497
NBEM01000026
Bacillota
Ligilactobacillus salivarius [NBEM]
73386
73293
-
SeC(p)
TCA
[ENA]
¡û
>W1730038499
NBEO01000036
Bacillota
Ligilactobacillus salivarius [NBEO]
234
141
-
SeC(p)
TCA
[ENA]
¡û
>W1730038500
NBEP01000089
Bacillota
Ligilactobacillus salivarius [NBEP]
19481
19574
+
SeC(p)
TCA
[ENA]
¡û
>W1730038501
NBEQ01000054
Bacillota
Ligilactobacillus salivarius [NBEQ]
34228
34135
-
SeC(p)
TCA
[ENA]
¡û
>W1730038502
NBER01000051
Bacillota
Ligilactobacillus salivarius [NBER]
60662
60569
-
SeC(p)
TCA
[ENA]
¡û
>W1730038505
NBEW01000070
Bacillota
Ligilactobacillus salivarius [NBEW]
73994
73901
-
SeC(p)
TCA
[ENA]
¡û
>W1730038506
NBEX01000093
Bacillota
Ligilactobacillus salivarius [NBEX]
72047
71954
-
SeC(p)
TCA
[ENA]
¡û
>W1730038508
NBEY01000090
Bacillota
Ligilactobacillus salivarius [NBEY]
125658
125565
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK