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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = TCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311611 (3 seq.)
>W1810608920
QGTQ01000037
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
25896
25971
+
Arg
TCT
[ENA]
¡û
>PL201001119
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
93615
93690
+
Arg
TCT
[ENA]
¡û
>W2110285556
JACXZA010000001
Bacillota
Paenibacillus sp. PR3 [JACXZA]
701049
701124
+
Arg
TCT
[ENA]
¡û
Identical group No.336106 (2 seq.)
>PL201000643
CP045273
Bacillota
Bacillus megaterium FDU301 plasmid:pFDU301A [CP045273]
171127
171204
+
Arg
TCT
[ENA]
¡û
>W2010515663
JAAMPM010000034
Bacillota
Bacillus megaterium IN_430 [JAAMPM]
323600
323677
+
Arg
TCT
[ENA]
¡û
Identical group No.336107 (1 seq.)
>PL201000644
CP045273
Bacillota
Bacillus megaterium FDU301 plasmid:pFDU301A [CP045273]
171217
171292
+
Arg
TCT
[ENA]
¡û
Identical group No.360063 (24 seq.)
>PL201000489
CP040853
Bacillota
Lactobacillus murinus V10 plasmid:unnamed [CP040853]
18129
18054
-
Arg
TCT
[ENA]
¡û
>W2012067007
VKBS01000009
Bacillota
Lactobacillus murinus VM2V3 [VKBS]
26495
26570
+
Arg
TCT
[ENA]
¡û
>W2012067051
VKBT01000007
Bacillota
Lactobacillus murinus VM2V2 [VKBT]
26495
26570
+
Arg
TCT
[ENA]
¡û
>W2012067112
VKBU01000037
Bacillota
Lactobacillus murinus VM2F3 [VKBU]
13813
13738
-
Arg
TCT
[ENA]
¡û
>W2012067161
VKBV01000035
Bacillota
Lactobacillus murinus VM1V3 [VKBV]
5324
5399
+
Arg
TCT
[ENA]
¡û
>W2012067214
VKBW01000037
Bacillota
Lactobacillus murinus VM1V2 [VKBW]
5325
5400
+
Arg
TCT
[ENA]
¡û
>W2012067246
VKBX01000010
Bacillota
Lactobacillus murinus VM1V1 [VKBX]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067309
VKBY01000029
Bacillota
Lactobacillus murinus VM1F3 [VKBY]
9797
9872
+
Arg
TCT
[ENA]
¡û
>W2012067345
VKBZ01000010
Bacillota
Lactobacillus murinus VM1F2 [VKBZ]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067415
VKCA01000038
Bacillota
Lactobacillus murinus VM1F1 [VKCA]
13813
13738
-
Arg
TCT
[ENA]
¡û
>W2012067541
VKCD01000008
Bacillota
Lactobacillus murinus SM2F2 [VKCD]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067590
VKCE01000010
Bacillota
Lactobacillus murinus SM1F2 [VKCE]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067638
VKCF01000010
Bacillota
Lactobacillus murinus SM1F1 [VKCF]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067688
VKCG01000009
Bacillota
Lactobacillus murinus 3V2P2 [VKCG]
26495
26570
+
Arg
TCT
[ENA]
¡û
>W2012067736
VKCH01000009
Bacillota
Lactobacillus murinus 3V1P2 [VKCH]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067795
VKCI01000028
Bacillota
Lactobacillus murinus 3V1P1 [VKCI]
9797
9872
+
Arg
TCT
[ENA]
¡û
>W2012067838
VKCJ01000009
Bacillota
Lactobacillus murinus 3S2P1 [VKCJ]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067887
VKCK01000010
Bacillota
Lactobacillus murinus 2V1P2 [VKCK]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012067953
VKCL01000028
Bacillota
Lactobacillus murinus 2V1P1 [VKCL]
13813
13738
-
Arg
TCT
[ENA]
¡û
>W2012067990
VKCM01000009
Bacillota
Lactobacillus murinus 2S2P1 [VKCM]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012068043
VKCN01000009
Bacillota
Lactobacillus murinus 1V2P2 [VKCN]
26495
26570
+
Arg
TCT
[ENA]
¡û
>W2012068091
VKCO01000008
Bacillota
Lactobacillus murinus 1V1P2 [VKCO]
27248
27323
+
Arg
TCT
[ENA]
¡û
>W2012068150
VKCP01000028
Bacillota
Lactobacillus murinus 1V1P1 [VKCP]
9797
9872
+
Arg
TCT
[ENA]
¡û
>W2012068193
VKCQ01000010
Bacillota
Lactobacillus murinus 1S2P1 [VKCQ]
27248
27323
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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