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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacillota
Anticodon = TGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16113 (1 seq.)
>PL201000640
CP045273
Bacillota
Bacillus megaterium FDU301 plasmid:pFDU301A [CP045273]
168249
168340
+
Ser
TGA
[ENA]
¡û
Identical group No.16114 (5 seq.)
>W1711116807
LUCO01000046
Bacillota
Priestia megaterium [LUCO]
7051
6959
-
Ser
TGA
[ENA]
¡û
>W1711116824
LUCO01000068
Bacillota
Priestia megaterium [LUCO]
597
505
-
Ser
TGA
[ENA]
¡û
>PL201000775
CP048891
Bacillota
Bacillus megaterium Mes11 plasmid:pBMG8 [CP048891]
11620
11712
+
Ser
TGA
[ENA]
¡û
>W1610928166
LUCO01000046
Bacillota
Priestia megaterium [LUCO]
7051
6959
-
Ser
TGA
[ENA]
¡û
>W1610928183
LUCO01000068
Bacillota
Priestia megaterium [LUCO]
597
505
-
Ser
TGA
[ENA]
¡û
Identical group No.18500 (3 seq.)
>W1911303807
NTWY01000061
Bacillota
Bacillus megaterium AFS008968 [NTWY]
36
128
+
Ser
TGA
[ENA]
¡û
>PL201001263
CP058266
Bacillota
Bacillus megaterium BIM B-1314D plasmid:pBM-Cp-1-4 [CP058266]
100456
100364
-
Ser
TGA
[ENA]
¡û
>W2011080853
NTWY01000061
Bacillota
Bacillus megaterium AFS008968 [NTWY]
36
128
+
Ser
TGA
[ENA]
¡û
Identical group No.18836 (5 seq.)
>W1710879082
LMRL01000010
Bacillota
Bacillus sp. Leaf75 [LMRL]
62124
62216
+
Ser
TGA
[ENA]
¡û
>W1711116764
LUCO01000010
Bacillota
Priestia megaterium [LUCO]
40959
40867
-
Ser
TGA
[ENA]
¡û
>PL201000762
CP048886
Bacillota
Bacillus megaterium Mes11 plasmid:pBMG3 [CP048886]
113402
113310
-
Ser
TGA
[ENA]
¡û
>W1610741428
LMRL01000010
Bacillota
Bacillus sp. Leaf75 [LMRL]
62124
62216
+
Ser
TGA
[ENA]
¡û
>W1610928123
LUCO01000010
Bacillota
Priestia megaterium [LUCO]
40959
40867
-
Ser
TGA
[ENA]
¡û
Identical group No.38109 (1 seq.)
>PL201000358
CP032366
Bacillota
Bacillus wiedmannii SR52 plasmid:unnamed1 [CP032366]
124356
124446
+
Ser
TGA
[ENA]
¡û
Identical group No.83860 (4 seq.)
>W1810608880
QGTQ01000021
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
57727
57639
-
Ser
TGA
[ENA]
¡û
>PL201001122
CP054613
Bacillota
Paenibacillus cellulosilyticus KACC 14175 plasmid:unnamed4 [CP054613]
2484847
2484935
+
Ser
TGA
[ENA]
¡û
>W2012432371
WSTC01000037
Bacillota
Paenibacillus sp. MMS18-CY102 [WSTC]
7592
7680
+
Ser
TGA
[ENA]
¡û
>W2110285571
JACXZA010000007
Bacillota
Paenibacillus sp. PR3 [JACXZA]
356795
356707
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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