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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = AAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.75216 (1 seq.)
>C181049910
CP021173
Betaproteobacteria
Candidatus Nasuia deltocephalinicola ENCA [CP021173]
39528
39614
+
Leu
AAG
-
¡û
Identical group No.135455 (1 seq.)
>C141004447
CP006059
Betaproteobacteria
Candidatus Nasuia deltocephalinicola str. NAS-ALF [CP006059]
33065
33150
+
Leu
AAG
[Ensembl]
¡û
Identical group No.150420 (1 seq.)
>C161053065
CP013211
Betaproteobacteria
Candidatus Nasuia deltocephalinicola PUNC [CP013211]
73573
73488
-
Pseudo
AAG
[Ensembl]
¡û
Identical group No.207124 (1 seq.)
>W2160018223
JAELTY010000963
Betaproteobacteria
Aquitalea sp. ASV16 [JAELTY]
488
391
-
Leu
AAG
[ENA]
¡û
Identical group No.544686 (3 seq.)
>C181164677
CP028360
Betaproteobacteria
Candidatus Vidania fulgoroideae OLIH [CP028360]
55499
55571
+
Leu
AAG
-
¡û
>C231533751
CP110502
Unclassified
Candidatus Vidania fulgoroideae [CP110502]
55496
55568
+
Leu
AAG
-
¡û
>C231533760
CP110503
Unclassified
Candidatus Vidania fulgoroideae [CP110503]
3381
3453
+
Leu
AAG
-
¡û
Identical group No.546543 (1 seq.)
>C161108486
LN999011
Betaproteobacteria
Candidatus Tremblaya princeps [LN999011]
30572
30499
-
Leu
AAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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