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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = AAT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343173 (3 seq.)
>C182000132
CP028360
Betaproteobacteria
Candidatus Vidania fulgoroideae OLIH [CP028360]
83551
83477
-
Ile
AAT
-
¡û
>C232000218
CP110503
Unclassified
Candidatus Vidania fulgoroideae [CP110503]
31407
31333
-
Ile
AAT
-
¡û
>C235017103
CP110502
Unclassified
Candidatus Vidania fulgoroideae [CP110502]
83533
83459
-
Ile
AAT
-
¡û
Identical group No.500960 (2 seq.)
>W1610459617
FKIM01000670
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIM]
414
339
-
Ile
AAT
[ENA]
¡û
>W1710459245
FKIM01000670
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIM]
414
339
-
Ile
AAT
[ENA]
¡û
Identical group No.524356 (1 seq.)
>W2010446135
JAABOS010000003
Betaproteobacteria
Undibacterium sp. B2R-29 [JAABOS]
482473
482547
+
Ile
AAT
[ENA]
¡û
Identical group No.715448 (1 seq.)
>W2011505466
RYDV01000007
Betaproteobacteria
Candidimonas sp. SYP-B2681 [RYDV]
221536
221462
-
Ile
AAT
[ENA]
¡û
Identical group No.725754 (1 seq.)
>W1710570491
FOVE01000010
Betaproteobacteria
Formivibrio citricus [FOVE]
12284
12358
+
Ile
AAT
[ENA]
¡û
Identical group No.880550 (3 seq.)
>C181164687
CP028360
Betaproteobacteria
Candidatus Vidania fulgoroideae OLIH [CP028360]
120461
120389
-
Ile
AAT
-
¡û
>C231533773
CP110503
Unclassified
Candidatus Vidania fulgoroideae [CP110503]
68320
68248
-
Ile
AAT
-
¡û
>C233008715
CP110502
Unclassified
Candidatus Vidania fulgoroideae [CP110502]
120446
120374
-
Ile
AAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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