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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = ACA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.396571 (1 seq.)
>W2130010384
JAAGPL010000075
Betaproteobacteria
Burkholderia sp. Ac-20353 [JAAGPL]
162
89
-
Cys
ACA
[ENA]
¡û
Identical group No.479273 (2 seq.)
>W1930038665
QTQP01000026
Betaproteobacteria
Burkholderia sp. Bp8963 [QTQP]
6478
6551
+
Cys
ACA
[ENA]
¡û
>W2030032633
QTQP01000026
Betaproteobacteria
Burkholderia sp. Bp8963 [QTQP]
6478
6551
+
Cys
ACA
[ENA]
¡û
Identical group No.726575 (1 seq.)
>W1510369783
CMYQ01000001
Betaproteobacteria
Neisseria meningitidis NM1837 [CMYQ]
15169
15094
-
Cys
ACA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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