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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = ACT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13987 (2 seq.)
>W1710961161
LPBN01000168
Betaproteobacteria
Burkholderia ubonensis [LPBN]
1183
1089
-
Ser
ACT
[ENA]
¡û
>W1610817375
LPBN01000168
Betaproteobacteria
Burkholderia ubonensis [LPBN]
1183
1089
-
Ser
ACT
[ENA]
¡û
Identical group No.58090 (2 seq.)
>W1810101998
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
108708
108797
+
Ser
ACT
[ENA]
¡û
>C241010915
AP027274
Betaproteobacteria
Polynucleobacter sp. TUM22923 [AP027274]
291208
291119
-
Ser
ACT
-
¡û
Identical group No.58094 (1 seq.)
>C241031823
CP028941
Betaproteobacteria
Polynucleobacter antarcticus LimPoW16 [CP028941]
260235
260146
-
Ser
ACT
-
¡û
Identical group No.66898 (1 seq.)
>W2110272323
JACVOO010000007
Betaproteobacteria
Polynucleobacter sp. 31A-FELB [JACVOO]
115195
115284
+
Ser
ACT
[ENA]
¡û
Identical group No.66900 (1 seq.)
>W2110272469
JACVOS010000010
Betaproteobacteria
Polynucleobacter sp. AM-25C3 [JACVOS]
30251
30162
-
Ser
ACT
[ENA]
¡û
Identical group No.66902 (3 seq.)
>W2110272992
JACVPG010000011
Betaproteobacteria
Polynucleobacter sp. Fuers-14 [JACVPG]
248999
249088
+
Ser
ACT
[ENA]
¡û
>W2110273108
JACVPJ010000009
Betaproteobacteria
Polynucleobacter sp. JS-Safj-400b-B2 [JACVPJ]
38900
38811
-
Ser
ACT
[ENA]
¡û
>W2110273117
JACVPJ010000020
Betaproteobacteria
Polynucleobacter sp. JS-Safj-400b-B2 [JACVPJ]
28204
28115
-
Ser
ACT
[ENA]
¡û
Identical group No.66903 (2 seq.)
>W2110273001
JACVPG010000042
Betaproteobacteria
Polynucleobacter sp. Fuers-14 [JACVPG]
1277
1366
+
Ser
ACT
[ENA]
¡û
>W2110273089
JACVPJ010000003
Betaproteobacteria
Polynucleobacter sp. JS-Safj-400b-B2 [JACVPJ]
177890
177979
+
Ser
ACT
[ENA]
¡û
Identical group No.68092 (1 seq.)
>C171035117
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1359522
1359611
+
Ser
ACT
-
¡û
Identical group No.74284 (1 seq.)
>W2110272358
JACVOP010000001
Betaproteobacteria
Polynucleobacter sp. 71A-WALBACH [JACVOP]
437409
437320
-
Ser
ACT
[ENA]
¡û
Identical group No.549841 (2 seq.)
>W1910699229
MERB01000054
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 [MERB]
11586
11514
-
Ser
ACT
[ENA]
¡û
>W2010832655
MERB01000054
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 [MERB]
11586
11514
-
Ser
ACT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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