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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = AGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.94649 (1 seq.)
>C181049922
CP021173
Betaproteobacteria
Candidatus Nasuia deltocephalinicola ENCA [CP021173]
121586
121499
-
Ser
AGA
-
¡û
Identical group No.103954 (1 seq.)
>C141004459
CP006059
Betaproteobacteria
Candidatus Nasuia deltocephalinicola str. NAS-ALF [CP006059]
94436
94352
-
Ser
AGA
[Ensembl]
¡û
Identical group No.104125 (1 seq.)
>C181164679
CP028360
Betaproteobacteria
Candidatus Vidania fulgoroideae OLIH [CP028360]
55651
55735
+
Ser
AGA
-
¡û
Identical group No.150419 (1 seq.)
>C161053045
CP013211
Betaproteobacteria
Candidatus Nasuia deltocephalinicola PUNC [CP013211]
12269
12352
+
Pseudo
AGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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