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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = AGT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342898 (2 seq.)
>C141004445
CP006059
Betaproteobacteria
Candidatus Nasuia deltocephalinicola str. NAS-ALF [CP006059]
5321
5396
+
Thr
AGT
[Ensembl]
¡û
>C211127534
CP060019
Unclassified
Candidatus Nasuia deltocephalinicola [CP060019]
5322
5397
+
Thr
AGT
-
¡û
Identical group No.395861 (3 seq.)
>W1910128346
BHVT01000057
Betaproteobacteria
Sulfurirhabdus autotrophica BiS0 [BHVT]
88232
88306
+
Thr
AGT
[ENA]
¡û
>W2010081047
BHVT01000057
Betaproteobacteria
Sulfurirhabdus autotrophica BiS0 [BHVT]
88232
88306
+
Thr
AGT
[ENA]
¡û
>W2011631039
SMCO01000002
Betaproteobacteria
Sulfurirhabdus autotrophica DSM 100309 [SMCO]
153860
153786
-
Thr
AGT
[ENA]
¡û
Identical group No.406856 (1 seq.)
>C161053063
CP013211
Betaproteobacteria
Candidatus Nasuia deltocephalinicola PUNC [CP013211]
101324
101249
-
Thr
AGT
[Ensembl]
¡û
Identical group No.442839 (2 seq.)
>W1911766061
QXDH01000001
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
1288344
1288271
-
Thr
AGT
[ENA]
¡û
>W2011324504
QXDH01000001
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
1288344
1288271
-
Thr
AGT
[ENA]
¡û
Identical group No.740607 (2 seq.)
>W2130026179
JAELTH010000314
Bacteroidota
Elizabethkingia sp. ASV34 [JAELTH]
198
281
+
Thr
AGT
[ENA]
¡û
>W2130026217
JAELTY010003373
Betaproteobacteria
Aquitalea sp. ASV16 [JAELTY]
280
197
-
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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