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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = GCG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361220 (1 seq.)
>W2110780034
VZQP01000010
Betaproteobacteria
Paraburkholderia sp. UCT31 [VZQP]
103592
103516
-
Arg
GCG
[ENA]
¡û
Identical group No.398730 (1 seq.)
>W2010672003
JACCCD010000001
Betaproteobacteria
Acidovorax sp. YL-MeA13-2016 [JACCCD]
4326952
4326879
-
Arg
GCG
[ENA]
¡û
Identical group No.615733 (1 seq.)
>w010092
AAKL01000060
Betaproteobacteria
Ralstonia solanacearum UW551 [AAKL]
34384
34312
-
Arg
GCG
[ENA]
¡û
Identical group No.620414 (1 seq.)
>C10114552
CP002161
Betaproteobacteria
Candidatus Zinderia insecticola CARI [CP002161]
141466
141540
+
Arg
GCG
[Ensembl]
¡û
Identical group No.703415 (2 seq.)
>W2110054603
BNCN01000008
Betaproteobacteria
Comamonas sp. KCTC 72670 [BNCN]
70637
70710
+
Arg
GCG
[ENA]
¡û
>W2110445679
JAERRD010000035
Betaproteobacteria
Comamonas sp. JC664 [JAERRD]
70637
70710
+
Arg
GCG
[ENA]
¡û
Identical group No.930105 (1 seq.)
>W2011626063
SLZJ01000009
Betaproteobacteria
Variovorax sp. BK370 [SLZJ]
323740
323813
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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