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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = TAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67422 (2 seq.)
>W1711957369
NBTZ01000045
Betaproteobacteria
Caballeronia sordidicola [NBTZ]
2678
2589
-
Leu
TAA
[ENA]
¡û
>PL171000990
CP014310
Betaproteobacteria
Burkholderia sp. PAMC 26561 plasmid:unnamed3
139308
139397
+
Leu
TAA
[ENA]
¡û
Identical group No.205034 (2 seq.)
>PL171001489
CP021449
Betaproteobacteria
Ralstonia solanacearum SEPPX05 plasmid:pSEPPX05
1066750
1066834
+
Leu
TAA
[ENA]
¡û
>W1810235314
PPFC01001024
Betaproteobacteria
Ralstonia solanacearum UTT-25 [PPFC]
16708
16624
-
Leu
TAA
[ENA]
¡û
Identical group No.210190 (35 seq.)
>W1710876409
LMPF01000001
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
584300
584216
-
Leu
TAA
[ENA]
¡û
>W1711706660
MSRG01000091
Betaproteobacteria
Caballeronia sordidicola [MSRG]
200706
200790
+
Leu
TAA
[ENA]
¡û
>W1711957314
NBTY01000003
Betaproteobacteria
Caballeronia sordidicola [NBTY]
169611
169695
+
Leu
TAA
[ENA]
¡û
>W1711957389
NBTZ01000112
Betaproteobacteria
Caballeronia sordidicola [NBTZ]
200907
200991
+
Leu
TAA
[ENA]
¡û
>WENV180344587
OBLL01052748
[OBLL] soil metagenome; soil
32
116
+
Leu
TAA
[ENA]
¡û
>W141727703
JNFG01000202
Betaproteobacteria
Caballeronia sordidicola [JNFG]
92541
92457
-
Leu
TAA
[ENA]
¡û
>W1910804569
MTHB01000275
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
3327
3243
-
Leu
TAA
[ENA]
¡û
>W1911498140
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
1635399
1635315
-
Leu
TAA
[ENA]
¡û
>PL201000206
CP014505
Betaproteobacteria
Burkholderia sp. PAMC 28687 plasmid: [CP014505]
1075772
1075688
-
Leu
TAA
[Ensembl]
¡û
>W2010370265
CAHJWQ010000509
Betaproteobacteria
Burkholderiaceae bacterium [CAHJWQ]
1744
1660
-
Leu
TAA
[ENA]
¡û
>W2010781261
LMUF01000030
Betaproteobacteria
Burkholderia sp. S171 [LMUF]
489214
489130
-
Leu
TAA
[ENA]
¡û
>W2010912281
MTHB01000275
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
3327
3243
-
Leu
TAA
[ENA]
¡û
>W2011159044
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
1635399
1635315
-
Leu
TAA
[ENA]
¡û
>W2011353480
RAIO01000001
Betaproteobacteria
Caballeronia udeis ES_PA-B7 [RAIO]
4415181
4415265
+
Leu
TAA
[ENA]
¡û
>W2011411298
RDRT01000001
Betaproteobacteria
Caballeronia udeis ES_FE-H11 [RDRT]
515134
515050
-
Leu
TAA
[ENA]
¡û
>W2011413203
REFQ01000001
Betaproteobacteria
Caballeronia udeis ES_PA-D4 [REFQ]
2169593
2169509
-
Leu
TAA
[ENA]
¡û
>W2011433138
RJKG01000001
Betaproteobacteria
Caballeronia udeis ES_PA-A8 [RJKG]
4217904
4217988
+
Leu
TAA
[ENA]
¡û
>W2011490600
RSET01000001
Betaproteobacteria
Caballeronia sordidicola ES_PA-B12 [RSET]
1726272
1726188
-
Leu
TAA
[ENA]
¡û
>W2011638329
SMMT01000001
Betaproteobacteria
Caballeronia sordidicola ES_PA-C8 [SMMT]
3050704
3050788
+
Leu
TAA
[ENA]
¡û
>W2011651208
SNYX01000001
Betaproteobacteria
Caballeronia udeis ES_AL-A7 [SNYX]
3917091
3917007
-
Leu
TAA
[ENA]
¡û
>W2011666139
SOSF01000001
Betaproteobacteria
Caballeronia udeis ES_FE-B12 [SOSF]
2484551
2484635
+
Leu
TAA
[ENA]
¡û
>W2012063883
VJWF01000001
Betaproteobacteria
Caballeronia udeis ES_AL-G7 [VJWF]
1951033
1950949
-
Leu
TAA
[ENA]
¡û
>W2110160762
JAAVUQ010000005
Betaproteobacteria
Caballeronia sp. dw_19 [JAAVUQ]
223112
223196
+
Leu
TAA
[ENA]
¡û
>W2110160959
JAAVUV010000003
Betaproteobacteria
Caballeronia sp. dw_276 [JAAVUV]
229140
229224
+
Leu
TAA
[ENA]
¡û
>C241133518
CP049156
Betaproteobacteria
Caballeronia sp. SBC1 [CP049156]
1293623
1293539
-
Leu
TAA
-
¡û
>C241135829
CP049316
Betaproteobacteria
Caballeronia sp. SBC2 [CP049316]
1432849
1432765
-
Leu
TAA
-
¡û
>C161070770
CP014306
Betaproteobacteria
Burkholderia sp. PAMC 26561 [CP014306, CP014307, CP014315]
2447563
2447479
-
Leu
TAA
[Ensembl]
¡û
>C161073100
CP014505
Betaproteobacteria
Burkholderia sp. PAMC 28687 [CP014505, CP014506, CP014507]
1075772
1075688
-
Leu
TAA
[Ensembl]
¡û
>W1610002281
AEJF01000193
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
1716
1632
-
Leu
TAA
[ENA]
¡û
>W1610206348
FCOC02000001
Betaproteobacteria
Caballeronia sordidicola [FCOC]
452809
452893
+
Leu
TAA
[ENA]
¡û
>W1610206791
FCOK02000027
Betaproteobacteria
Caballeronia udeis [FCOK]
18916
19000
+
Leu
TAA
[ENA]
¡û
>W1610738755
LMPF01000001
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
584300
584216
-
Leu
TAA
[ENA]
¡û
>W1710003720
AEJF01000193
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
1716
1632
-
Leu
TAA
[ENA]
¡û
>W1710207479
FCOC02000001
Betaproteobacteria
Caballeronia sordidicola [FCOC]
452809
452893
+
Leu
TAA
[ENA]
¡û
>W1710207541
FCOK02000027
Betaproteobacteria
Caballeronia udeis [FCOK]
18916
19000
+
Leu
TAA
[ENA]
¡û
Identical group No.210764 (1 seq.)
>PL171000466
CP002879
Betaproteobacteria
Cupriavidus necator N-1 plasmid:pBB1
56997
57081
+
Leu
TAA
[ENA]
¡û
Identical group No.274979 (8 seq.)
>W1710882301
LMTS01000025
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
13510
13587
+
Leu
TAA
[ENA]
¡û
>W1810046234
NNBQ01000007
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
282319
282242
-
Leu
TAA
[ENA]
¡û
>W1810046331
NNBR01000010
Betaproteobacteria
Variovorax sp. B2 [NNBR]
398460
398383
-
Leu
TAA
[ENA]
¡û
>PL201001439
LR594660
Betaproteobacteria
Variovorax sp. PBL-H6 plasmid:2 [LR594660]
774674
774751
+
Leu
TAA
[ENA]
¡û
>PL201001503
LR594667
Betaproteobacteria
Variovorax sp. SRS16 plasmid:2 [LR594667]
63515
63438
-
Leu
TAA
[ENA]
¡û
>PL201001545
LR594672
Betaproteobacteria
Variovorax sp. PBL-E5 plasmid:2 [LR594672]
63515
63438
-
Leu
TAA
[ENA]
¡û
>PL201001583
LR594690
Betaproteobacteria
Variovorax sp. WDL1 plasmid:2 [LR594690]
63335
63258
-
Leu
TAA
[ENA]
¡û
>W1610744227
LMTS01000025
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
13510
13587
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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