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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Campylobacterota
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.831232 (4 seq.)
>WENV181212170
OFBM01019252
[OFBM] metagenome; hydrothermal vent
373
447
+
Val
GAC
[ENA]
¡û
>PL201000586
CP043618
Campylobacterota
Sulfurimonas sp. GYSZ_1 plasmid:unnamed [CP043618]
26772
26846
+
Val
GAC
[ENA]
¡û
>PL201000588
CP043618
Campylobacterota
Sulfurimonas sp. GYSZ_1 plasmid:unnamed [CP043618]
9820
9746
-
Val
GAC
[ENA]
¡û
>C241081509
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
1903713
1903787
+
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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