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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.333286 (13 seq.)
>W131164265
ARAN01000166
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-C04 [ARAN]
7026
6950
-
Arg
ACG
[ENA]
¡û
>W131164310
ARAP01000125
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-G06 [ARAP]
9901
9825
-
Arg
ACG
[ENA]
¡û
>W131164426
ARAT01000071
Betaproteobacteria
Gallionella sp. SCGC AAA018-N21 [ARAT]
2509
2585
+
Arg
ACG
[ENA]
¡û
>W1711583283
MNWZ01000168
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
497
421
-
Arg
ACG
[ENA]
¡û
>w018941
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
6533
6460
-
Arg
ACG
[ENA]
¡û
>WENV180582501
OCMR01001548
[OCMR] metagenome; diffuse fluid
197
273
+
Arg
ACG
[ENA]
¡û
>C181033347
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
593221
593297
+
Arg
ACG
-
¡û
>C181033426
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1696600
1696524
-
Arg
ACG
-
¡û
>W2011396394
RCFQ01000006
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
794
870
+
Arg
ACG
[ENA]
¡û
>W2012196090
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
206020
206096
+
Arg
ACG
[ENA]
¡û
>W2012196163
VWNC01000012
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
1923
1999
+
Arg
ACG
[ENA]
¡û
>W1710081296
BDFD01000013
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
5813
5889
+
Arg
ACG
[ENA]
¡û
>W1710759495
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
76941
77017
+
Arg
ACG
[ENA]
¡û
Identical group No.346127 (6 seq.)
>W131164291
ARAO01000204
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
3717
3641
-
Arg
ACG
[ENA]
¡û
>W131164467
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
54501
54425
-
Arg
ACG
[ENA]
¡û
>W1711583230
MNWY01000075
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
23550
23626
+
Arg
ACG
[ENA]
¡û
>W2010572235
JAAVJJ010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
27453
27529
+
Arg
ACG
[ENA]
¡û
>W2011964415
VBRY01000013
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
90260
90184
-
Arg
ACG
[ENA]
¡û
>W2011964432
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
123522
123598
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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