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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139330 (2 seq.)
>W2011964408
VBRY01000008
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
135000
134914
-
Leu
CAA
[ENA]
¡û
>W2011964425
VBRZ01000001
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
237957
238043
+
Leu
CAA
[ENA]
¡û
Identical group No.139450 (1 seq.)
>W2012196150
VWNC01000005
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
164068
163982
-
Leu
CAA
[ENA]
¡û
Identical group No.148174 (4 seq.)
>W131164446
ARAU01000001
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
91713
91627
-
Leu
CAA
[ENA]
¡û
>w018924
AATS01000002
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
196969
196881
-
Leu
CAA
[ENA]
¡û
>W2010572220
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
349510
349596
+
Leu
CAA
[ENA]
¡û
>W1710759482
LIGC01000002
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
23422
23508
+
Leu
CAA
[ENA]
¡û
Identical group No.152940 (1 seq.)
>W2012196116
VWNB01000011
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
66221
66307
+
Leu
CAA
[ENA]
¡û
Identical group No.170572 (1 seq.)
>W2011396391
RCFQ01000002
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
299
213
-
Leu
CAA
[ENA]
¡û
Identical group No.224131 (2 seq.)
>W141818943
JQLW01000006
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
223822
223906
+
Leu
CAA
[ENA]
¡û
>W2110504311
JAFIUL010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFIUL]
4418
4334
-
Leu
CAA
[ENA]
¡û
Identical group No.241700 (1 seq.)
>W2110504076
JAFISI010000008
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISI]
18973
19057
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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