This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.793866 (5 seq.)
>W131164451
ARAU01000005
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
32506
32432
-
Val
CAC
[ENA]
¡û
>w018951
AATS01000008
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
41420
41494
+
Val
CAC
[ENA]
¡û
>WENV181293031
OFHF01067789
[OFHF] soil metagenome; Clay
194
268
+
Val
CAC
[ENA]
¡û
>W2010572225
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
891865
891939
+
Val
CAC
[ENA]
¡û
>W1710759498
LIGC01000004
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
103537
103611
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK