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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CAT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326099 (13 seq.)
>W1711585584
MNZW01000004
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_59_37 [MNZW]
17986
18062
+
Met
CAT
[ENA]
¡û
>W131231761
AUIS01000003
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
132908
132832
-
Met
CAT
[ENA]
¡û
>w018920
AATS01000001
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
285406
285333
-
Met
CAT
[ENA]
¡û
>WENV180320620
OBKQ01001757
[OBKQ] soil metagenome; Clay
968
1044
+
Met
CAT
[ENA]
¡û
>WENV180342385
OBLJ01013313
[OBLJ] soil metagenome; Clay
184
108
-
Met
CAT
[ENA]
¡û
>WENV181292851
OFHF01029570
[OFHF] soil metagenome; Clay
25
101
+
Met
CAT
[ENA]
¡û
>WENV181293161
OFHG01000156
[OFHG] soil metagenome; Clay
3322
3246
-
Met
CAT
[ENA]
¡û
>WENV181295972
OFHJ01003053
[OFHJ] soil metagenome; Clay
1756
1832
+
Met
CAT
[ENA]
¡û
>W2011964412
VBRY01000010
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
71515
71591
+
Met
CAT
[ENA]
¡û
>W2011964426
VBRZ01000001
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
131213
131137
-
Met
CAT
[ENA]
¡û
>W2110154945
JAAOMM010000034
Acidithiobacillia
Acidithiobacillus caldus MELC5 [JAAOMM]
87
163
+
Met
CAT
[ENA]
¡û
>W2110155254
JAAOMS010000180
Acidithiobacillia
Acidithiobacillus caldus CV18-1 [JAAOMS]
7966
7890
-
Met
CAT
[ENA]
¡û
>W1710759503
LIGC01000006
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
132800
132876
+
Met
CAT
[ENA]
¡û
Identical group No.333281 (6 seq.)
>W1711583232
MNWY01000092
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
20952
20876
-
Met
CAT
[ENA]
¡û
>W1711583267
MNWZ01000093
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
5575
5651
+
Met
CAT
[ENA]
¡û
>C181033362
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2399226
2399150
-
Met
CAT
-
¡û
>C181033387
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
111569
111645
+
Met
CAT
-
¡û
>W2012196075
VWNB01000001
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
239503
239427
-
Ile2
CAT
[ENA]
¡û
>W2012196132
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
446506
446430
-
Ile2
CAT
[ENA]
¡û
Identical group No.346128 (6 seq.)
>W131164302
ARAO01000238
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
2564
2640
+
Met
CAT
[ENA]
¡û
>W131164473
ARAU01000015
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
26039
25963
-
Met
CAT
[ENA]
¡û
>w018958
AATS01000017
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
47921
47997
+
Met
CAT
[ENA]
¡û
>W2010572244
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
53508
53584
+
Ile2
CAT
[ENA]
¡û
>W1710081292
BDFD01000011
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
29285
29361
+
Met
CAT
[ENA]
¡û
>W1710759511
LIGC01000010
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
59994
60070
+
Met
CAT
[ENA]
¡û
Identical group No.359855 (2 seq.)
>W2011964387
VBRY01000002
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
43402
43478
+
Ile2
CAT
[ENA]
¡û
>W2011964445
VBRZ01000006
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
57595
57671
+
Ile2
CAT
[ENA]
¡û
Identical group No.360339 (3 seq.)
>W141818936
JQLW01000005
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
368459
368383
-
Met
CAT
[ENA]
¡û
>W2011396417
RCFQ01000023
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
5217
5141
-
Met
CAT
[ENA]
¡û
>W2012196142
VWNC01000003
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
9572
9496
-
Met
CAT
[ENA]
¡û
Identical group No.398573 (2 seq.)
>W131164481
ARAU01000028
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
2685
2609
-
Met
CAT
[ENA]
¡û
>W2010572237
JAAVJJ010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
405189
405265
+
Met
CAT
[ENA]
¡û
Identical group No.409421 (2 seq.)
>W131164267
ARAN01000183
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-C04 [ARAN]
23895
23971
+
Met
CAT
[ENA]
¡û
>W2011396398
RCFQ01000006
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
36553
36477
-
Ile2
CAT
[ENA]
¡û
Identical group No.417617 (3 seq.)
>W1711583233
MNWY01000099
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
3847
3771
-
Met
CAT
[ENA]
¡û
>C181033370
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1569173
1569097
-
Met
CAT
-
¡û
>W2012196117
VWNB01000013
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
61978
62054
+
Met
CAT
[ENA]
¡û
Identical group No.733998 (58 seq.)
>W1710891842
LNDB01000023
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
655
581
-
Met
CAT
[ENA]
¡û
>W1710927090
LOEZ01000036
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
33339
33265
-
Met
CAT
[ENA]
¡û
>W1711342443
MCHF01000012
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
24843
24917
+
Met
CAT
[ENA]
¡û
>W1711583266
MNWZ01000086
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
842
768
-
Met
CAT
[ENA]
¡û
>W1711583313
MNXA01000036
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_55_237 [MNXA]
1910
1984
+
Met
CAT
[ENA]
¡û
>W1711585599
MNZW01000013
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_59_37 [MNZW]
120374
120448
+
Met
CAT
[ENA]
¡û
>W131162520
AQYY01000004
Bacillota
Dehalobacter sp. FTH1 [AQYY]
268725
268651
-
Met
CAT
[ENA]
¡û
>W131164198
ARAJ01000102
Zetaproteobacteria
zeta proteobacterium SCGC AB-604-B04 [ARAJ]
843
769
-
Met
CAT
[ENA]
¡û
>w018950
AATS01000008
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
32699
32773
+
Met
CAT
[ENA]
¡û
>WENV180248929
OBEQ010153620
[OBEQ] groundwater metagenome; groundwater
231
157
-
fMet
CAT
[ENA]
¡û
>WENV180294822
OBIZ01000733
[OBIZ] soil metagenome; soil
1660
1586
-
fMet
CAT
[ENA]
¡û
>WENV180320966
OBKQ01070900
[OBKQ] soil metagenome; Clay
265
191
-
fMet
CAT
[ENA]
¡û
>WENV180342453
OBLJ01021709
[OBLJ] soil metagenome; Clay
385
459
+
fMet
CAT
[ENA]
¡û
>WENV180350234
OBLQ010000005
[OBLQ] soil metagenome; soil
10215
10141
-
fMet
CAT
[ENA]
¡û
>WENV180350430
OBLQ010000858
[OBLQ] soil metagenome; soil
7751
7825
+
fMet
CAT
[ENA]
¡û
>W141088277
AUUR01000025
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
75093
75019
-
Met
CAT
[ENA]
¡û
>WENV181293432
OFHG01003524
[OFHG] soil metagenome; Clay
325
251
-
fMet
CAT
[ENA]
¡û
>WENV181294515
OFHH01005977
[OFHH] soil metagenome; Clay
167
93
-
fMet
CAT
[ENA]
¡û
>WENV181296706
OFHJ01093398
[OFHJ] soil metagenome; Clay
463
389
-
fMet
CAT
[ENA]
¡û
>WENV181297425
OFHK01042030
[OFHK] soil metagenome; Clay
227
153
-
fMet
CAT
[ENA]
¡û
>W141246554
CANE01000005
Bacillota
Dehalobacter restrictus E1 [CANE]
47530
47604
+
Met
CAT
[ENA]
¡û
>W141246610
CANF01000026
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
47529
47603
+
Met
CAT
[ENA]
¡û
>WENV170658904
JUEG02001334
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
255661
255735
+
Met
CAT
[ENA]
¡û
>WENV170659028
JXWO01000083
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
18386
18460
+
Met
CAT
[ENA]
¡û
>WENV170784155
MCHG01000048
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
37551
37477
-
Met
CAT
[ENA]
¡û
>WENV170784325
MCHG01000828
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
5031
5105
+
Met
CAT
[ENA]
¡û
>C181033379
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
708142
708068
-
Met
CAT
-
¡û
>C181033380
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
702154
702080
-
Met
CAT
-
¡û
>C181033403
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1618552
1618626
+
Met
CAT
-
¡û
>C141011733
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
480303
480377
+
Met
CAT
[Ensembl]
¡û
>W1910647157
LXPC01000009
Bacillota
Dehalobacter sp. MCB1 [LXPC]
30682
30756
+
Met
CAT
[ENA]
¡û
>W1911608693
PNXX01000006
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
30593
30667
+
Met
CAT
[ENA]
¡û
>W1911613566
POSF01000019
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
154218
154144
-
Met
CAT
[ENA]
¡û
>W1810047156
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
4760
4834
+
Met
CAT
[ENA]
¡û
>W1810047175
OMOF01000101
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
68262
68188
-
Met
CAT
[ENA]
¡û
>W2010572224
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
863693
863767
+
fMet
CAT
[ENA]
¡û
>W2010792517
LXPC01000009
Bacillota
Dehalobacter sp. MCB1 [LXPC]
30682
30756
+
fMet
CAT
[ENA]
¡û
>W2011206915
PNXX01000006
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
30593
30667
+
fMet
CAT
[ENA]
¡û
>W2011207103
POSF01000019
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
154218
154144
-
fMet
CAT
[ENA]
¡û
>W2011674088
SPQQ01000010
Bacillota
Desulfosporosinus fructosivorans 63.6F [SPQQ]
139549
139475
-
fMet
CAT
[ENA]
¡û
>W2011674105
SPQQ01000036
Bacillota
Desulfosporosinus fructosivorans 63.6F [SPQQ]
1870
1796
-
fMet
CAT
[ENA]
¡û
>W2011674129
SPQR01000003
Bacillota
Desulfosporosinus sp. Sb-LF [SPQR]
390039
389965
-
fMet
CAT
[ENA]
¡û
>W2011674171
SPQR01000025
Bacillota
Desulfosporosinus sp. Sb-LF [SPQR]
18009
17935
-
fMet
CAT
[ENA]
¡û
>W2012196098
VWNB01000005
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
83751
83825
+
fMet
CAT
[ENA]
¡û
>W2012196156
VWNC01000008
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
52440
52366
-
fMet
CAT
[ENA]
¡û
>C231314381
CP092282
Bacillota
Dehalobacter sp. DCM [CP092282]
699976
700050
+
fMet
CAT
-
¡û
>C241114526
CP046996
Bacillota
Dehalobacter restrictus 12DCA [CP046996]
534737
534811
+
fMet
CAT
-
¡û
>W1511430029
JUEE01000021
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
18456
18530
+
Met
CAT
[ENA]
¡û
>W1511533683
JYNH01000068
Bacillota
Desulfosporosinus sp. I2 [JYNH]
8773
8847
+
Met
CAT
[ENA]
¡û
>W1511564561
LADV01000104
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
14566
14640
+
Met
CAT
[ENA]
¡û
>W11177257
AGAF01000105
Bacillota
Desulfosporosinus sp. OT [AGAF]
67210
67136
-
Met
CAT
[ENA]
¡û
>W121036139
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
247623
247697
+
Met
CAT
[ENA]
¡û
>C131008557
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
1919911
1919837
-
Met
CAT
[Ensembl]
¡û
>C131008608
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
1949690
1949616
-
Met
CAT
[Ensembl]
¡û
>W1610752207
LNDB01000023
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
655
581
-
Met
CAT
[ENA]
¡û
>W1610784632
LOEZ01000036
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
33339
33265
-
Met
CAT
[ENA]
¡û
>W1710516519
FNCP01000059
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
166
240
+
Met
CAT
[ENA]
¡û
>W1710759497
LIGC01000004
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
94816
94890
+
Met
CAT
[ENA]
¡û
Identical group No.749196 (4 seq.)
>W1711583265
MNWZ01000086
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
980
906
-
Met
CAT
[ENA]
¡û
>W1711585554
MNZV01000010
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_46_52 [MNZV]
207639
207565
-
Met
CAT
[ENA]
¡û
>W141818945
JQLW01000006
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
216615
216541
-
Met
CAT
[ENA]
¡û
>W2110504310
JAFIUL010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFIUL]
14895
14969
+
fMet
CAT
[ENA]
¡û
Identical group No.767798 (9 seq.)
>W131164450
ARAU01000005
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
41377
41303
-
Met
CAT
[ENA]
¡û
>W1711583244
MNWY01000113
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
1371
1297
-
Met
CAT
[ENA]
¡û
>w018949
AATS01000008
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
32563
32637
+
Met
CAT
[ENA]
¡û
>W2011396393
RCFQ01000003
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
124051
123977
-
fMet
CAT
[ENA]
¡û
>W2011964403
VBRY01000006
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
26211
26137
-
fMet
CAT
[ENA]
¡û
>W2011964404
VBRY01000006
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
26078
26004
-
fMet
CAT
[ENA]
¡û
>W2011964465
VBRZ01000044
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
557
483
-
fMet
CAT
[ENA]
¡û
>W2011964466
VBRZ01000044
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
424
350
-
fMet
CAT
[ENA]
¡û
>W1710759496
LIGC01000004
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
94680
94754
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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