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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513676 (24 seq.)
>W1711583221
MNWY01000036
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
28457
28382
-
Trp
CCA
[ENA]
¡û
>W131034051
AJGP01000029
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [AJGP]
136
211
+
Trp
CCA
[ENA]
¡û
>W131231229
AUIH01000024
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
47034
46959
-
Trp
CCA
[ENA]
¡û
>WENV180296658
OBJA01001540
[OBJA] soil metagenome; sediment, water from around vicinity
168
243
+
Trp
CCA
[ENA]
¡û
>WENV180368146
OBOF01029728
[OBOF] marine metagenome; ENVO:00002010
112
187
+
Trp
CCA
[ENA]
¡û
>WENV182546161
OJBO01001615
[OJBO] seawater metagenome; Sea water
7474
7399
-
Trp
CCA
[ENA]
¡û
>WENV182546728
OJBP01001690
[OJBP] seawater metagenome; Sea water
1705
1630
-
Trp
CCA
[ENA]
¡û
>WENV182589181
OJIA01000004
[OJIA] seawater metagenome; Sea water
102
177
+
Trp
CCA
[ENA]
¡û
>C181200142
CP031415
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [CP031415]
525771
525846
+
Trp
CCA
-
¡û
>W1910744967
MIES01000023
Gammaproteobacteria
Saccharospirillum sp. MSK14-1 [MIES]
15667
15592
-
Trp
CCA
[ENA]
¡û
>W1810477919
QAPE01000019
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [QAPE]
143
218
+
Trp
CCA
[ENA]
¡û
>W1810604655
QGMP01000004
Gammaproteobacteria
Isoalcanivorax indicus SW127 [QGMP]
136861
136786
-
Trp
CCA
[ENA]
¡û
>C151006522
CP004387
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [CP004387]
598348
598423
+
Trp
CCA
[Ensembl]
¡û
>W2010071727
AQOR01000056
Gammaproteobacteria
Alcanivorax sp. S71-1-4 [AQOR]
15830
15755
-
Trp
CCA
[ENA]
¡û
>W2010529703
JAAOIX010000018
Gammaproteobacteria
Pseudomaricurvus alcaniphilus MEBiC06469 [JAAOIX]
16039
15964
-
Trp
CCA
[ENA]
¡û
>W2010878399
MIES01000023
Gammaproteobacteria
Saccharospirillum sp. MSK14-1 [MIES]
15667
15592
-
Trp
CCA
[ENA]
¡û
>W2011398769
RCIP01000009
Gammaproteobacteria
Saccharospirillum sp. LZ-5 [RCIP]
421
496
+
Trp
CCA
[ENA]
¡û
>W2011670463
SPIA01000006
Gammaproteobacteria
Gammaproteobacteria bacterium LSUCC0057 [SPIA]
345
420
+
Trp
CCA
[ENA]
¡û
>W2011964405
VBRY01000007
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
680
755
+
Trp
CCA
[ENA]
¡û
>W2011964443
VBRZ01000004
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
181076
181001
-
Trp
CCA
[ENA]
¡û
>W2110047984
BMXR01000024
Gammaproteobacteria
Saccharospirillum salsuginis KCTC 22169 [BMXR]
15741
15666
-
Trp
CCA
[ENA]
¡û
>W2110691052
JAIOUB010000005
Gammaproteobacteria
Alcanivorax sp. JB21 [JAIOUB]
1277
1352
+
Trp
CCA
[ENA]
¡û
>C231402040
CP098455
Gammaproteobacteria
Spongiibacter taiwanensis SPT1 [CP098455]
1651928
1651853
-
Trp
CCA
-
¡û
>W1511564153
LADM01000059
Gammaproteobacteria
Gammaproteobacteria bacterium BRH_c0 [LADM]
15376
15301
-
Trp
CCA
[ENA]
¡û
Identical group No.537593 (10 seq.)
>W131164307
ARAO01000238
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
37338
37263
-
Trp
CCA
[ENA]
¡û
>W131164331
ARAQ01000126
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-C20 [ARAQ]
25767
25692
-
Trp
CCA
[ENA]
¡û
>W1711585567
MNZV01000019
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_46_52 [MNZV]
151256
151181
-
Trp
CCA
[ENA]
¡û
>C181033360
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2521038
2520963
-
Trp
CCA
-
¡û
>W141818926
JQLW01000001
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
83628
83553
-
Trp
CCA
[ENA]
¡û
>W2011396413
RCFQ01000015
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
248
323
+
Trp
CCA
[ENA]
¡û
>W2012196115
VWNB01000010
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
90746
90671
-
Trp
CCA
[ENA]
¡û
>W2012196147
VWNC01000004
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
114303
114378
+
Trp
CCA
[ENA]
¡û
>W2130030624
JAFISZ010000031
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
417
342
-
Trp
CCA
[ENA]
¡û
>W1710081304
BDFD01000027
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
362
437
+
Trp
CCA
[ENA]
¡û
Identical group No.609205 (4 seq.)
>W131164454
ARAU01000008
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
134334
134259
-
Trp
CCA
[ENA]
¡û
>w018965
AATS01000024
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
16824
16901
+
Trp
CCA
[ENA]
¡û
>W2010572241
JAAVJJ010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
466418
466343
-
Trp
CCA
[ENA]
¡û
>W1710759525
LIGC01000026
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
19368
19293
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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