This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359854 (2 seq.)
>W2011964407
VBRY01000007
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
113660
113584
-
Arg
CCG
[ENA]
¡û
>W2011964442
VBRZ01000004
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
67925
68001
+
Arg
CCG
[ENA]
¡û
Identical group No.360336 (3 seq.)
>C181033385
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
206688
206612
-
Arg
CCG
-
¡û
>W2012196074
VWNB01000001
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
247994
247918
-
Arg
CCG
[ENA]
¡û
>W2012196131
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
455178
455102
-
Arg
CCG
[ENA]
¡û
Identical group No.397092 (4 seq.)
>W131164478
ARAU01000021
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
60946
60870
-
Arg
CCG
[ENA]
¡û
>WENV180582935
OCMR01131134
[OCMR] metagenome; diffuse fluid
135
59
-
Arg
CCG
[ENA]
¡û
>W2010572246
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
84217
84293
+
Arg
CCG
[ENA]
¡û
>W1710759513
LIGC01000010
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
109881
109957
+
Arg
CCG
[ENA]
¡û
Identical group No.400180 (1 seq.)
>W2110504309
JAFIUL010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFIUL]
15858
15782
-
Arg
CCG
[ENA]
¡û
Identical group No.492112 (1 seq.)
>W2011396422
RCFQ01000033
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
11880
11804
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK