This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.333279 (3 seq.)
>W1711583251
MNWZ01000016
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
5299
5223
-
Arg
CCT
[ENA]
¡û
>W2011964414
VBRY01000010
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
116426
116502
+
Arg
CCT
[ENA]
¡û
>W2011964428
VBRZ01000001
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
18524
18448
-
Arg
CCT
[ENA]
¡û
Identical group No.360340 (2 seq.)
>W2012196153
VWNC01000006
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
50706
50630
-
Arg
CCT
[ENA]
¡û
>W1710081300
BDFD01000017
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
31598
31522
-
Arg
CCT
[ENA]
¡û
Identical group No.397088 (4 seq.)
>W131164469
ARAU01000011
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
89836
89912
+
Arg
CCT
[ENA]
¡û
>w018922
AATS01000002
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
77003
77079
+
Arg
CCT
[ENA]
¡û
>W2010572230
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
470776
470700
-
Arg
CCT
[ENA]
¡û
>W1710759484
LIGC01000002
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
143395
143319
-
Arg
CCT
[ENA]
¡û
Identical group No.400172 (1 seq.)
>W2110504140
JAFISZ010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
24861
24785
-
Arg
CCT
[ENA]
¡û
Identical group No.417616 (2 seq.)
>C181033372
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1388613
1388537
-
Arg
CCT
-
¡û
>W2012196082
VWNB01000003
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
198359
198435
+
Arg
CCT
[ENA]
¡û
Identical group No.492110 (1 seq.)
>W2011396389
RCFQ01000001
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
179475
179399
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK