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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26713 (2 seq.)
>W2011964395
VBRY01000003
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
284
375
+
Ser
CGA
[ENA]
¡û
>W2011964448
VBRZ01000013
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
88335
88244
-
Ser
CGA
[ENA]
¡û
Identical group No.28753 (4 seq.)
>W131164456
ARAU01000009
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
73918
74009
+
Ser
CGA
[ENA]
¡û
>w018929
AATS01000003
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
293115
293208
+
Ser
CGA
[ENA]
¡û
>W2010572247
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
287795
287886
+
Ser
CGA
[ENA]
¡û
>W1710759506
LIGC01000009
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
58948
58857
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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