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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343285 (5 seq.)
>W1711583223
MNWY01000037
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
20360
20436
+
Pro
CGG
[ENA]
¡û
>C181033339
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
516932
517008
+
Pro
CGG
-
¡û
>C181033418
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1763252
1763176
-
Pro
CGG
-
¡û
>W2011964422
VBRY01000014
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
2115
2191
+
Pro
CGG
[ENA]
¡û
>W2011964449
VBRZ01000014
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
48925
48849
-
Pro
CGG
[ENA]
¡û
Identical group No.397090 (4 seq.)
>W131164449
ARAU01000005
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
47416
47492
+
Pro
CGG
[ENA]
¡û
>w018954
AATS01000008
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
26525
26447
-
Pro
CGG
[ENA]
¡û
>W2010572228
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
857654
857578
-
Pro
CGG
[ENA]
¡û
>W1710759501
LIGC01000004
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
88641
88565
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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