This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.568140 (8 seq.)
>W131164313
ARAP01000127
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-G06 [ARAP]
17284
17359
+
Thr
CGT
[ENA]
¡û
>W131164477
ARAU01000020
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
54472
54547
+
Thr
CGT
[ENA]
¡û
>w018948
AATS01000006
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
20696
20619
-
Thr
CGT
[ENA]
¡û
>W2010572239
JAAVJJ010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
141178
141253
+
Thr
CGT
[ENA]
¡û
>W2011396392
RCFQ01000003
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
71846
71921
+
Thr
CGT
[ENA]
¡û
>W2011964396
VBRY01000003
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
129401
129326
-
Thr
CGT
[ENA]
¡û
>W2011964462
VBRZ01000032
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
23186
23111
-
Thr
CGT
[ENA]
¡û
>W1710759521
LIGC01000015
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
18226
18151
-
Thr
CGT
[ENA]
¡û
Identical group No.632491 (1 seq.)
>W2012196092
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
12956
12881
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK