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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.767797 (2 seq.)
>W2011964399
VBRY01000005
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
2156
2230
+
Glu
CTC
[ENA]
¡û
>W2011964461
VBRZ01000025
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
1978
2052
+
Glu
CTC
[ENA]
¡û
Identical group No.768056 (2 seq.)
>W2012196079
VWNB01000002
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
50859
50785
-
Glu
CTC
[ENA]
¡û
>W2012196155
VWNC01000007
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
13873
13799
-
Glu
CTC
[ENA]
¡û
Identical group No.793867 (8 seq.)
>W131164320
ARAP01000144
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-G06 [ARAP]
26331
26405
+
Glu
CTC
[ENA]
¡û
>W131164453
ARAU01000007
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
6165
6091
-
Glu
CTC
[ENA]
¡û
>w018956
AATS01000011
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
44860
44784
-
Glu
CTC
[ENA]
¡û
>WENV180083379
MPMD02050463
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
428
502
+
Glu
CTC
[ENA]
¡û
>WENV180277202
OBHV01118348
[OBHV] metagenome; water
164
90
-
Glu
CTC
[ENA]
¡û
>C181033350
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1286784
1286858
+
Glu
CTC
-
¡û
>W2010572236
JAAVJJ010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
189805
189879
+
Glu
CTC
[ENA]
¡û
>W1710759505
LIGC01000008
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
18799
18725
-
Glu
CTC
[ENA]
¡û
Identical group No.861013 (1 seq.)
>W2011396418
RCFQ01000030
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
5246
5172
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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