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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.887461 (2 seq.)
>W2011964421
VBRY01000013
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
71832
71759
-
Gln
CTG
[ENA]
¡û
>W2011964438
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
167093
167166
+
Gln
CTG
[ENA]
¡û
Identical group No.887589 (4 seq.)
>W2011396419
RCFQ01000031
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
23328
23401
+
Gln
CTG
[ENA]
¡û
>W2012196099
VWNB01000005
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
194014
193941
-
Gln
CTG
[ENA]
¡û
>W2012196164
VWNC01000012
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
11909
11982
+
Gln
CTG
[ENA]
¡û
>W1710081298
BDFD01000015
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
10859
10932
+
Gln
CTG
[ENA]
¡û
Identical group No.899436 (5 seq.)
>W131164447
ARAU01000002
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
17892
17965
+
Gln
CTG
[ENA]
¡û
>w018957
AATS01000014
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
18402
18477
+
Gln
CTG
[ENA]
¡û
>C181033348
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
600865
600938
+
Gln
CTG
-
¡û
>W2010572243
JAAVJJ010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
265140
265067
-
Gln
CTG
[ENA]
¡û
>W1710759519
LIGC01000014
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
72870
72797
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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