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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = CTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.568137 (5 seq.)
>W131164464
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
58950
58875
-
Lys
CTT
[ENA]
¡û
>w018938
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
11324
11247
-
Lys
CTT
[ENA]
¡û
>W2011964420
VBRY01000013
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
77283
77208
-
Lys
CTT
[ENA]
¡û
>W2011964437
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
161642
161717
+
Lys
CTT
[ENA]
¡û
>W1710759492
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
72151
72226
+
Lys
CTT
[ENA]
¡û
Identical group No.568616 (3 seq.)
>C181033344
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
587536
587611
+
Lys
CTT
-
¡û
>W2012196087
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
200473
200548
+
Lys
CTT
[ENA]
¡û
>W2012196141
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
3958
3883
-
Lys
CTT
[ENA]
¡û
Identical group No.610852 (1 seq.)
>W2010572261
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
291848
291923
+
Lys
CTT
[ENA]
¡û
Identical group No.715326 (1 seq.)
>W2011396402
RCFQ01000006
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
14950
14875
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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