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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537478 (9 seq.)
>W131164480
ARAU01000026
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
27602
27677
+
Phe
GAA
[ENA]
¡û
>W1711583263
MNWZ01000061
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
458
383
-
Phe
GAA
[ENA]
¡û
>w018953
AATS01000008
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
90699
90774
+
Phe
GAA
[ENA]
¡û
>C181033381
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
520271
520196
-
Phe
GAA
-
¡û
>C181033404
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1752246
1752321
+
Phe
GAA
-
¡û
>W2010572227
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
943205
943280
+
Phe
GAA
[ENA]
¡û
>W2012196091
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
127822
127747
-
Phe
GAA
[ENA]
¡û
>W2012196127
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
70578
70653
+
Phe
GAA
[ENA]
¡û
>W1710759500
LIGC01000004
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
152816
152891
+
Phe
GAA
[ENA]
¡û
Identical group No.550841 (11 seq.)
>W1711409914
MGPJ01000049
Unclassified
Deltaproteobacteria bacterium GWA2_50_8 [MGPJ]
29636
29709
+
Phe
GAA
[ENA]
¡û
>W1711583215
MNWY01000025
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
21217
21292
+
Phe
GAA
[ENA]
¡û
>W1910726503
MGRO01000025
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_50_15 [MGRO]
20706
20779
+
Phe
GAA
[ENA]
¡û
>W1910727081
MGSF01000062
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16 [MGSF]
27254
27181
-
Phe
GAA
[ENA]
¡û
>W1910727420
MGSP01000034
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11 [MGSP]
37722
37649
-
Phe
GAA
[ENA]
¡û
>W2010859931
MGRO01000025
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_50_15 [MGRO]
20706
20779
+
Phe
GAA
[ENA]
¡û
>W2010860509
MGSF01000062
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16 [MGSF]
27254
27181
-
Phe
GAA
[ENA]
¡û
>W2010860848
MGSP01000034
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11 [MGSP]
37722
37649
-
Phe
GAA
[ENA]
¡û
>W2011964385
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
5491
5416
-
Phe
GAA
[ENA]
¡û
>W2011964451
VBRZ01000017
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
5513
5438
-
Phe
GAA
[ENA]
¡û
>W1710081302
BDFD01000018
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
49397
49472
+
Phe
GAA
[ENA]
¡û
Identical group No.552339 (3 seq.)
>W131164245
ARAL01000106
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-J06 [ARAL]
12030
12105
+
Phe
GAA
[ENA]
¡û
>W131164326
ARAQ01000125
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-C20 [ARAQ]
27692
27767
+
Phe
GAA
[ENA]
¡û
>W2110504147
JAFITE010000018
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFITE]
1263
1188
-
Phe
GAA
[ENA]
¡û
Identical group No.715327 (1 seq.)
>W2011396410
RCFQ01000012
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
70413
70338
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK