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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.749194 (22 seq.)
>W131164460
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
71179
71105
-
Val
GAC
[ENA]
¡û
>W1711583228
MNWY01000053
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
2514
2588
+
Val
GAC
[ENA]
¡û
>W1711583252
MNWZ01000024
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
108
182
+
Val
GAC
[ENA]
¡û
>W1711583315
MNXA01000042
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_55_237 [MNXA]
28827
28901
+
Val
GAC
[ENA]
¡û
>W1711585568
MNZV01000019
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_46_52 [MNZV]
101277
101203
-
Val
GAC
[ENA]
¡û
>W1711585604
MNZW01000018
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_59_37 [MNZW]
7534
7460
-
Val
GAC
[ENA]
¡û
>w018934
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
23749
23678
-
Val
GAC
[ENA]
¡û
>WENV180294790
OBIZ01000236
[OBIZ] soil metagenome; soil
9382
9456
+
Val
GAC
[ENA]
¡û
>WENV180350819
OBLQ010012336
[OBLQ] soil metagenome; soil
2206
2280
+
Val
GAC
[ENA]
¡û
>WENV180582891
OCMR01114491
[OCMR] metagenome; diffuse fluid
128
54
-
Val
GAC
[ENA]
¡û
>C181033340
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
574685
574759
+
Val
GAC
-
¡û
>C181033419
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1712342
1712268
-
Val
GAC
-
¡û
>W141818928
JQLW01000001
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
11269
11195
-
Val
GAC
[ENA]
¡û
>W2010572257
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
279619
279693
+
Val
GAC
[ENA]
¡û
>W2011396404
RCFQ01000007
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
14739
14665
-
Val
GAC
[ENA]
¡û
>W2011964416
VBRY01000013
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
87243
87169
-
Val
GAC
[ENA]
¡û
>W2011964433
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
151682
151756
+
Val
GAC
[ENA]
¡û
>W2012196083
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
190355
190429
+
Val
GAC
[ENA]
¡û
>W2012196137
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
13943
13869
-
Val
GAC
[ENA]
¡û
>W2110504146
JAFITE010000007
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFITE]
20927
21001
+
Val
GAC
[ENA]
¡û
>W1710081305
BDFD01000031
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
383
457
+
Val
GAC
[ENA]
¡û
>W1710759488
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
59725
59799
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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