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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139332 (2 seq.)
>W2011964389
VBRY01000002
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
277843
277929
+
Leu
GAG
[ENA]
¡û
>W2011964441
VBRZ01000003
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
62040
61954
-
Leu
GAG
[ENA]
¡û
Identical group No.139449 (1 seq.)
>W2012196149
VWNC01000004
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
78116
78030
-
Leu
GAG
[ENA]
¡û
Identical group No.148175 (4 seq.)
>W131164474
ARAU01000015
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
117
31
-
Leu
GAG
[ENA]
¡û
>W2010572245
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
79446
79532
+
Leu
GAG
[ENA]
¡û
>W2011396411
RCFQ01000013
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
63194
63280
+
Leu
GAG
[ENA]
¡û
>W1710759512
LIGC01000010
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
85917
86003
+
Leu
GAG
[ENA]
¡û
Identical group No.152939 (2 seq.)
>C181033355
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2340005
2340091
+
Leu
GAG
-
¡û
>W2012196110
VWNB01000010
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
127585
127671
+
Leu
GAG
[ENA]
¡û
Identical group No.224132 (2 seq.)
>W141818952
JQLW01000008
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
106711
106795
+
Leu
GAG
[ENA]
¡û
>W2110504312
JAFIUL010000012
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFIUL]
5265
5181
-
Leu
GAG
[ENA]
¡û
Identical group No.241701 (1 seq.)
>W2110504079
JAFISI010000027
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISI]
789
705
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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