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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.548404 (25 seq.)
>W131164293
ARAO01000226
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
30784
30859
+
Gly
GCC
[ENA]
¡û
>W131164470
ARAU01000011
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
21980
21905
-
Gly
GCC
[ENA]
¡û
>W131164472
ARAU01000011
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
21699
21624
-
Gly
GCC
[ENA]
¡û
>w018927
AATS01000002
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
8001
7929
-
Gly
GCC
[ENA]
¡û
>w018925
AATS01000002
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
8279
8207
-
Gly
GCC
[ENA]
¡û
>C181033375
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
758079
758004
-
Gly
GCC
-
¡û
>C181033377
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
757739
757664
-
Gly
GCC
-
¡û
>C181033399
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1580092
1580167
+
Gly
GCC
-
¡û
>C181033401
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1580410
1580485
+
Gly
GCC
-
¡û
>W2010572221
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
539507
539582
+
Gly
GCC
[ENA]
¡û
>W2010572223
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
539785
539860
+
Gly
GCC
[ENA]
¡û
>W2011396395
RCFQ01000006
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
105199
105124
-
Gly
GCC
[ENA]
¡û
>W2011396397
RCFQ01000006
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
104956
104881
-
Gly
GCC
[ENA]
¡û
>W2011964400
VBRY01000006
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
146943
146868
-
Gly
GCC
[ENA]
¡û
>W2011964402
VBRY01000006
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
146663
146588
-
Gly
GCC
[ENA]
¡û
>W2011964454
VBRZ01000020
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
36227
36302
+
Gly
GCC
[ENA]
¡û
>W2011964456
VBRZ01000020
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
36507
36582
+
Gly
GCC
[ENA]
¡û
>W2012196094
VWNB01000005
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
40671
40746
+
Gly
GCC
[ENA]
¡û
>W2012196096
VWNB01000005
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
41007
41082
+
Gly
GCC
[ENA]
¡û
>W2012196157
VWNC01000010
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
52278
52353
+
Gly
GCC
[ENA]
¡û
>W2012196159
VWNC01000010
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
52616
52691
+
Gly
GCC
[ENA]
¡û
>W1710081268
BDFD01000001
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
184444
184519
+
Gly
GCC
[ENA]
¡û
>W1710081270
BDFD01000001
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
184716
184791
+
Gly
GCC
[ENA]
¡û
>W1710759522
LIGC01000023
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
13187
13112
-
Gly
GCC
[ENA]
¡û
>W1710759524
LIGC01000023
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
12909
12834
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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