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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.40493 (2 seq.)
>W2011964411
VBRY01000009
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
286
196
-
Ser
GCT
[ENA]
¡û
>W2011964431
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
122430
122520
+
Ser
GCT
[ENA]
¡û
Identical group No.59224 (2 seq.)
>W131164290
ARAO01000204
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
4303
4214
-
Ser
GCT
[ENA]
¡û
>W2110504077
JAFISI010000010
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISI]
14285
14374
+
Ser
GCT
[ENA]
¡û
Identical group No.60931 (7 seq.)
>W131164466
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
55474
55385
-
Ser
GCT
[ENA]
¡û
>w018940
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
7848
7757
-
Ser
GCT
[ENA]
¡û
>W2010572234
JAAVJJ010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
26636
26725
+
Ser
GCT
[ENA]
¡û
>W2012196089
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
205348
205437
+
Ser
GCT
[ENA]
¡û
>W2012196162
VWNC01000012
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
1253
1342
+
Ser
GCT
[ENA]
¡û
>W1710081295
BDFD01000013
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
5135
5224
+
Ser
GCT
[ENA]
¡û
>W1710759494
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
75627
75716
+
Ser
GCT
[ENA]
¡û
Identical group No.66999 (1 seq.)
>W2110504145
JAFITE010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFITE]
32237
32148
-
Ser
GCT
[ENA]
¡û
Identical group No.75213 (2 seq.)
>C181033346
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
592605
592694
+
Ser
GCT
-
¡û
>W2011396421
RCFQ01000031
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
240
151
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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