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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57072 (5 seq.)
>W1711583255
MNWZ01000030
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
1302
1213
-
Ser
GGA
[ENA]
¡û
>W2011964384
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
16755
16666
-
Ser
GGA
[ENA]
¡û
>W2011964450
VBRZ01000017
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
16779
16690
-
Ser
GGA
[ENA]
¡û
>W2012196093
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
7473
7384
-
Ser
GGA
[ENA]
¡û
>W2012196128
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
183149
183238
+
Ser
GGA
[ENA]
¡û
Identical group No.66491 (4 seq.)
>W131164476
ARAU01000020
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
10244
10333
+
Ser
GGA
[ENA]
¡û
>w018947
AATS01000006
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
64742
64651
-
Ser
GGA
[ENA]
¡û
>W2010572238
JAAVJJ010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
97302
97391
+
Ser
GGA
[ENA]
¡û
>W1710759520
LIGC01000015
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
62273
62184
-
Ser
GGA
[ENA]
¡û
Identical group No.98058 (1 seq.)
>W2011396406
RCFQ01000010
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
67504
67592
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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