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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.333278 (10 seq.)
>W131164468
ARAU01000011
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
85896
85972
+
Pro
GGG
[ENA]
¡û
>W1711583250
MNWZ01000016
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
9152
9076
-
Pro
GGG
[ENA]
¡û
>w018921
AATS01000002
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
73062
73140
+
Pro
GGG
[ENA]
¡û
>C181033371
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1392286
1392210
-
Pro
GGG
-
¡û
>C181033394
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1049740
1049816
+
Pro
GGG
-
¡û
>W2010572229
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
474716
474640
-
Pro
GGG
[ENA]
¡û
>W2012196081
VWNB01000003
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
194700
194776
+
Pro
GGG
[ENA]
¡û
>W2012196152
VWNC01000006
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
54359
54283
-
Pro
GGG
[ENA]
¡û
>W1710081299
BDFD01000017
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
35281
35205
-
Pro
GGG
[ENA]
¡û
>W1710759483
LIGC01000002
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
147335
147259
-
Pro
GGG
[ENA]
¡û
Identical group No.359852 (2 seq.)
>W2011964413
VBRY01000010
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
112194
112270
+
Pro
GGG
[ENA]
¡û
>W2011964427
VBRZ01000001
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
22756
22680
-
Pro
GGG
[ENA]
¡û
Identical group No.492111 (1 seq.)
>W2011396405
RCFQ01000009
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
17917
17841
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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