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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.749193 (6 seq.)
>W1711583247
MNWZ01000006
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
24
98
+
Thr
GGT
[ENA]
¡û
>C181033359
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2522598
2522524
-
Thr
GGT
-
¡û
>C181033412
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
2286767
2286693
-
Thr
GGT
-
¡û
>W2012196114
VWNB01000010
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
92304
92230
-
Thr
GGT
[ENA]
¡û
>W2012196146
VWNC01000004
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
112745
112819
+
Thr
GGT
[ENA]
¡û
>W1710081314
BDFD01000043
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
267
193
-
Thr
GGT
[ENA]
¡û
Identical group No.749276 (7 seq.)
>W131164486
ARAU01000038
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
2259
2333
+
Thr
GGT
[ENA]
¡û
>W1711583220
MNWY01000036
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
30047
29973
-
Thr
GGT
[ENA]
¡û
>W1711585561
MNZV01000012
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_46_52 [MNZV]
3020
3094
+
Thr
GGT
[ENA]
¡û
>w018964
AATS01000024
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
15250
15326
+
Thr
GGT
[ENA]
¡û
>W141818932
JQLW01000003
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
1636
1710
+
Thr
GGT
[ENA]
¡û
>W2010572251
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
346495
346569
+
Thr
GGT
[ENA]
¡û
>W1710759510
LIGC01000009
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
271
197
-
Thr
GGT
[ENA]
¡û
Identical group No.767799 (10 seq.)
>WENV180295597
OBIZ01171557
[OBIZ] soil metagenome; soil
184
110
-
Thr
GGT
[ENA]
¡û
>WENV180320726
OBKQ01011578
[OBKQ] soil metagenome; Clay
510
436
-
Thr
GGT
[ENA]
¡û
>WENV180350425
OBLQ010000805
[OBLQ] soil metagenome; soil
77
3
-
Thr
GGT
[ENA]
¡û
>WENV180582550
OCMR01009497
[OCMR] metagenome; diffuse fluid
339
265
-
Thr
GGT
[ENA]
¡û
>WENV181292676
OFHF01005760
[OFHF] soil metagenome; Clay
1657
1583
-
Thr
GGT
[ENA]
¡û
>WENV181293421
OFHG01003279
[OFHG] soil metagenome; Clay
4426
4500
+
Thr
GGT
[ENA]
¡û
>WENV181296203
OFHJ01013322
[OFHJ] soil metagenome; Clay
561
635
+
Thr
GGT
[ENA]
¡û
>WENV181296926
OFHK01002433
[OFHK] soil metagenome; Clay
2014
2088
+
Thr
GGT
[ENA]
¡û
>W2011964393
VBRY01000002
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
344610
344684
+
Thr
GGT
[ENA]
¡û
>W2011964470
VBRZ01000057
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
568
494
-
Thr
GGT
[ENA]
¡û
Identical group No.793633 (2 seq.)
>W131164330
ARAQ01000126
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-C20 [ARAQ]
27366
27292
-
Thr
GGT
[ENA]
¡û
>W2130030623
JAFISZ010000031
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
2052
1978
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK