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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212195 (11 seq.)
>W131164328
ARAQ01000126
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-C20 [ARAQ]
27581
27497
-
Tyr
GTA
[ENA]
¡û
>W131164484
ARAU01000038
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
2035
2119
+
Tyr
GTA
[ENA]
¡û
>W1711583218
MNWY01000036
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
30273
30189
-
Tyr
GTA
[ENA]
¡û
>w018962
AATS01000024
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
15027
15111
+
Tyr
GTA
[ENA]
¡û
>C181033410
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
2286970
2286886
-
Tyr
GTA
-
¡û
>W2010572249
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
346271
346355
+
Tyr
GTA
[ENA]
¡û
>W2011964391
VBRY01000002
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
344394
344478
+
Tyr
GTA
[ENA]
¡û
>W2011964468
VBRZ01000057
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
784
700
-
Tyr
GTA
[ENA]
¡û
>W2130030621
JAFISZ010000031
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
2267
2183
-
Tyr
GTA
[ENA]
¡û
>W1710081312
BDFD01000043
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
489
405
-
Tyr
GTA
[ENA]
¡û
>W1710759508
LIGC01000009
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
495
411
-
Tyr
GTA
[ENA]
¡û
Identical group No.215959 (3 seq.)
>C181033357
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2522822
2522738
-
Tyr
GTA
-
¡û
>W2012196112
VWNB01000010
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
92526
92442
-
Tyr
GTA
[ENA]
¡û
>W2012196144
VWNC01000004
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
112523
112607
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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