This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308123 (93 seq.)
>W1711065275
LSBQ01000022
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
23356
23280
-
Asp
GTC
[ENA]
¡û
>W1711065276
LSBQ01000022
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
23253
23177
-
Asp
GTC
[ENA]
¡û
>W1711317453
MAXH01000078
Thermodesulfobacteriota
Desulfobulbaceae bacterium S3730MH12 [MAXH]
10053
9977
-
Asp
GTC
[ENA]
¡û
>W1711356885
MDGT01000002
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
168387
168463
+
Asp
GTC
[ENA]
¡û
>W1711356886
MDGT01000002
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
168490
168566
+
Asp
GTC
[ENA]
¡û
>W1711583272
MNWZ01000104
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
8913
8989
+
Asp
GTC
[ENA]
¡û
>W1711583293
MNXA01000015
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_55_237 [MNXA]
6871
6947
+
Asp
GTC
[ENA]
¡û
>W1711585550
MNZV01000009
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_46_52 [MNZV]
285752
285828
+
Asp
GTC
[ENA]
¡û
>W1711585593
MNZW01000010
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_59_37 [MNZW]
202052
202128
+
Asp
GTC
[ENA]
¡û
>W131164316
ARAP01000132
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-G06 [ARAP]
7150
7226
+
Asp
GTC
[ENA]
¡û
>C000600
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
2591346
2591270
-
Asp
GTC
[Ensembl]
¡û
>C010547
CP000544
Gammaproteobacteria
Halorhodospira halophila SL1 [CP000544]
677873
677797
-
Asp
GTC
[Ensembl]
¡û
>w012960
AAMX01000028
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
7054
7132
+
Asp
GTC
[ENA]
¡û
>w012959
AAMX01000028
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
6951
7029
+
Asp
GTC
[ENA]
¡û
>WENV180320639
OBKQ01002556
[OBKQ] soil metagenome; Clay
529
453
-
Asp
GTC
[ENA]
¡û
>WENV180342239
OBLJ01001664
[OBLJ] soil metagenome; Clay
648
572
-
Asp
GTC
[ENA]
¡û
>WENV181293238
OFHG01000549
[OFHG] soil metagenome; Clay
859
935
+
Asp
GTC
[ENA]
¡û
>WENV181313290
OFJF01010456
[OFJF] marine metagenome; seawater
188
112
-
Asp
GTC
[ENA]
¡û
>C08000373
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
2591346
2591273
-
Asp
GTC
[Ensembl]
¡û
>WENV182560986
OJDV01001370
[OJDV] seawater metagenome; Sea water
4306
4230
-
Asp
GTC
[ENA]
¡û
>WENV182588985
OJHY01006396
[OJHY] seawater metagenome; Sea water
534
458
-
Asp
GTC
[ENA]
¡û
>WENV183708828
PDWI01020241
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
106
30
-
Asp
GTC
[ENA]
¡û
>WENV183709172
PDWI01025001
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5550
5626
+
Asp
GTC
[ENA]
¡û
>WENV183714320
PDWI01177643
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1203
1279
+
Asp
GTC
[ENA]
¡û
>WENV183720861
PDWJ01047642
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3889
3965
+
Asp
GTC
[ENA]
¡û
>WENV183746800
PPCM01000011
[PPCM] marine sediment metagenome; marine sediment
402527
402451
-
Asp
GTC
[ENA]
¡û
>WENV183746802
PPCM01000011
[PPCM] marine sediment metagenome; marine sediment
402319
402243
-
Asp
GTC
[ENA]
¡û
>WENV170013941
AVFP01000159
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
4264
4340
+
Asp
GTC
[ENA]
¡û
>WENV170680367
LFCJ01009668
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6074
5998
-
Asp
GTC
[ENA]
¡û
>WENV170682325
LFFM01009268
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1893
1817
-
Asp
GTC
[ENA]
¡û
>WENV170695477
LGVE01102654
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
316
240
-
Asp
GTC
[ENA]
¡û
>WENV170696834
LGVF01053501
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
5321
5397
+
Asp
GTC
[ENA]
¡û
>WENV170702366
LKMJ01001521
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12243
12167
-
Asp
GTC
[ENA]
¡û
>WENV170740374
LULR01007162
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
600
524
-
Asp
GTC
[ENA]
¡û
>WENV170885664
MDTC01206593
[MDTC] marine metagenome; seawater
5645
5569
-
Asp
GTC
[ENA]
¡û
>WENV170921285
MDTG01011459
[MDTG] marine metagenome; seawater
4715
4791
+
Asp
GTC
[ENA]
¡û
>WENV170921286
MDTG01011459
[MDTG] marine metagenome; seawater
4818
4894
+
Asp
GTC
[ENA]
¡û
>WENV170964402
MRWG01010092
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2422
2346
-
Asp
GTC
[ENA]
¡û
>WENV170964618
MRWG01024134
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
967
891
-
Asp
GTC
[ENA]
¡û
>C181001649
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
552030
552106
+
Asp
GTC
-
¡û
>C181033366
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1932073
1931997
-
Asp
GTC
-
¡û
>C181033368
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1931830
1931754
-
Asp
GTC
-
¡û
>C181033391
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
543614
543690
+
Asp
GTC
-
¡û
>C181146727
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1794353
1794277
-
Asp
GTC
-
¡û
>C181146728
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1794232
1794156
-
Asp
GTC
-
¡û
>W09104163
AALK01000005
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [AALK]
146
70
-
Asp
GTC
[ENA]
¡û
>W09105227
AAOQ01000004
Gammaproteobacteria
Halorhodospira halophila SL1 [AAOQ]
26944
26868
-
Asp
GTC
[ENA]
¡û
>W141818957
JQLW01000009
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
57252
57176
-
Asp
GTC
[ENA]
¡û
>W1910699268
MERD01000031
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 [MERD]
13702
13626
-
Asp
GTC
[ENA]
¡û
>W1911585204
PIPS01000002
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
62981
63057
+
Asp
GTC
[ENA]
¡û
>W1911585205
PIPS01000002
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
63102
63178
+
Asp
GTC
[ENA]
¡û
>W1911585365
PIPV01000010
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
25744
25820
+
Asp
GTC
[ENA]
¡û
>W1911585366
PIPV01000010
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
25847
25923
+
Asp
GTC
[ENA]
¡û
>W1911585843
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1126857
1126781
-
Asp
GTC
[ENA]
¡û
>W1911585844
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1126728
1126652
-
Asp
GTC
[ENA]
¡û
>W1810671406
QJST01000011
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
62765
62689
-
Asp
GTC
[ENA]
¡û
>W1810671407
QJST01000011
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
62662
62586
-
Asp
GTC
[ENA]
¡û
>W2010347838
CADCXY010000001
Gammaproteobacteria
Idiomarina sp. CECT 9734 [CADCXY]
913500
913424
-
Asp
GTC
[ENA]
¡û
>W2010347839
CADCXY010000001
Gammaproteobacteria
Idiomarina sp. CECT 9734 [CADCXY]
913398
913322
-
Asp
GTC
[ENA]
¡û
>W2010832694
MERD01000031
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 [MERD]
13702
13626
-
Asp
GTC
[ENA]
¡û
>W2011194597
PIPS01000002
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
62981
63057
+
Asp
GTC
[ENA]
¡û
>W2011194598
PIPS01000002
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
63102
63178
+
Asp
GTC
[ENA]
¡û
>W2011194758
PIPV01000010
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
25744
25820
+
Asp
GTC
[ENA]
¡û
>W2011194759
PIPV01000010
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
25847
25923
+
Asp
GTC
[ENA]
¡û
>W2011195236
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1126857
1126781
-
Asp
GTC
[ENA]
¡û
>W2011195237
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1126728
1126652
-
Asp
GTC
[ENA]
¡û
>W2011393340
RCDA01000007
Gammaproteobacteria
Alkalispirillum mobile DSM 12769 [RCDA]
27587
27511
-
Asp
GTC
[ENA]
¡û
>W2011396409
RCFQ01000010
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
47448
47372
-
Asp
GTC
[ENA]
¡û
>W2011649201
SNXI01000014
Gammaproteobacteria
Idiomarina aquatica 18_TX [SNXI]
44963
44887
-
Asp
GTC
[ENA]
¡û
>W2011649202
SNXI01000014
Gammaproteobacteria
Idiomarina aquatica 18_TX [SNXI]
44842
44766
-
Asp
GTC
[ENA]
¡û
>W2011702247
SWCN01000005
Thermodesulfobacteriota
Desulforhopalus sp. IMCC35007 [SWCN]
34836
34912
+
Asp
GTC
[ENA]
¡û
>W2011702249
SWCN01000005
Thermodesulfobacteriota
Desulforhopalus sp. IMCC35007 [SWCN]
35063
35139
+
Asp
GTC
[ENA]
¡û
>W2011964381
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
216453
216529
+
Asp
GTC
[ENA]
¡û
>W2011964459
VBRZ01000023
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
10290
10366
+
Asp
GTC
[ENA]
¡û
>W2012196106
VWNB01000009
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
7628
7704
+
Asp
GTC
[ENA]
¡û
>W2012196108
VWNB01000009
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
7871
7947
+
Asp
GTC
[ENA]
¡û
>W2012196121
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
418849
418925
+
Asp
GTC
[ENA]
¡û
>W2012196123
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
419094
419170
+
Asp
GTC
[ENA]
¡û
>C211013556
AP024086
Thermodesulfobacteriota
Desulfobulbaceae bacterium KT2 [AP024086]
1862662
1862586
-
Asp
GTC
-
¡û
>C211013558
AP024086
Thermodesulfobacteriota
Desulfobulbaceae bacterium KT2 [AP024086]
1862315
1862239
-
Asp
GTC
-
¡û
>W2110751889
NHSE01000006
Gammaproteobacteria
Halorhodospira halophila IM9620 [NHSE]
13385
13461
+
Asp
GTC
[ENA]
¡û
>W2110752278
NHSN01000010
Gammaproteobacteria
Halorhodospira halophila IM9626 [NHSN]
22493
22417
-
Asp
GTC
[ENA]
¡û
>W2110753396
NRRM01000003
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [NRRM]
104359
104283
-
Asp
GTC
[ENA]
¡û
>W2110753431
NRRN01000012
Gammaproteobacteria
Halorhodospira abdelmalekii DSM 2110 [NRRN]
61663
61587
-
Asp
GTC
[ENA]
¡û
>W2110753485
NRRO01000006
Gammaproteobacteria
Halorhodospira halophila IM 9630 [NRRO]
21035
21111
+
Asp
GTC
[ENA]
¡û
>C241146384
CP050695
Gammaproteobacteria
Aquisalimonas sp. 2447 [CP050695]
2693489
2693413
-
Asp
GTC
-
¡û
>W1610906064
LSBQ01000022
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
23356
23280
-
Asp
GTC
[ENA]
¡û
>W1610906065
LSBQ01000022
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
23253
23177
-
Asp
GTC
[ENA]
¡û
>W1710081282
BDFD01000004
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
59566
59642
+
Asp
GTC
[ENA]
¡û
>W1710081284
BDFD01000004
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
59805
59881
+
Asp
GTC
[ENA]
¡û
>W1710525179
FNJI01000010
Thermodesulfobacteriota
Desulforhopalus singaporensis [FNJI]
131698
131622
-
Asp
GTC
[ENA]
¡û
>W1710549080
FOEG01000001
Gammaproteobacteria
Aquisalimonas asiatica [FOEG]
918643
918567
-
Asp
GTC
[ENA]
¡û
>W1710587106
FQXS01000038
Thermodesulfobacteriota
Desulfofustis glycolicus DSM 9705 [FQXS]
35707
35783
+
Asp
GTC
[ENA]
¡û
Identical group No.333282 (9 seq.)
>W1711583242
MNWY01000106
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
11375
11299
-
Asp
GTC
[ENA]
¡û
>W1711583270
MNWZ01000104
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
8645
8721
+
Asp
GTC
[ENA]
¡û
>W1711583998
MNXX01000114
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
18077
18001
-
Asp
GTC
[ENA]
¡û
>W131164220
ARAK01000178
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-C09 [ARAK]
4196
4272
+
Asp
GTC
[ENA]
¡û
>W131164252
ARAM01000092
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-E04 [ARAM]
9739
9663
-
Asp
GTC
[ENA]
¡û
>W131164459
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
96566
96490
-
Asp
GTC
[ENA]
¡û
>w018933
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
54707
54629
-
Asp
GTC
[ENA]
¡û
>W2010572256
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
249010
249086
+
Asp
GTC
[ENA]
¡û
>W1710759487
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
28768
28844
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK