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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.568615 (1 seq.)
>W2012196140
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
4053
3978
-
His
GTG
[ENA]
¡û
Identical group No.715325 (1 seq.)
>W2011396401
RCFQ01000006
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
15063
14988
-
His
GTG
[ENA]
¡û
Identical group No.749197 (8 seq.)
>W131164463
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
59068
58994
-
His
GTG
[ENA]
¡û
>W1711583279
MNWZ01000168
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
5676
5602
-
His
GTG
[ENA]
¡û
>w018937
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
11442
11366
-
His
GTG
[ENA]
¡û
>C181033343
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
587442
587516
+
His
GTG
-
¡û
>C181033422
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1702439
1702365
-
His
GTG
-
¡û
>W2010572260
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
291730
291804
+
His
GTG
[ENA]
¡û
>W2012196086
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
200380
200454
+
His
GTG
[ENA]
¡û
>W1710759491
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
72033
72107
+
His
GTG
[ENA]
¡û
Identical group No.767795 (2 seq.)
>W2011964419
VBRY01000013
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
77400
77326
-
His
GTG
[ENA]
¡û
>W2011964436
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
161525
161599
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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