This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = GTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537480 (4 seq.)
>W1711583276
MNWZ01000167
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
19690
19615
-
Asn
GTT
[ENA]
¡û
>C181033369
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1871948
1871873
-
Asn
GTT
-
¡û
>W2011396412
RCFQ01000014
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
47837
47912
+
Asn
GTT
[ENA]
¡û
>W2012196124
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
483955
484030
+
Asn
GTT
[ENA]
¡û
Identical group No.537483 (11 seq.)
>W1710778089
LJCP01000010
Gammaproteobacteria
Thiohalorhabdus denitrificans [LJCP]
365830
365755
-
Asn
GTT
[ENA]
¡û
>W131164475
ARAU01000017
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
26239
26314
+
Asn
GTT
[ENA]
¡û
>W1711583289
MNXA01000011
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_55_237 [MNXA]
26672
26747
+
Asn
GTT
[ENA]
¡û
>W1711585612
MNZW01000030
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_59_37 [MNZW]
20403
20328
-
Asn
GTT
[ENA]
¡û
>w018955
AATS01000009
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
39185
39108
-
Asn
GTT
[ENA]
¡û
>WENV170130912
CENR01066242
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
47
122
+
Asn
GTT
[ENA]
¡û
>WENV170683231
LFIK01007390
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
8495
8570
+
Asn
GTT
[ENA]
¡û
>W2010572253
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
66420
66495
+
Asn
GTT
[ENA]
¡û
>W1610642275
LJCP01000010
Gammaproteobacteria
Thiohalorhabdus denitrificans [LJCP]
365830
365755
-
Asn
GTT
[ENA]
¡û
>W1710506419
FMUN01000003
Gammaproteobacteria
Thiohalorhabdus denitrificans [FMUN]
366024
365949
-
Asn
GTT
[ENA]
¡û
>W1710759514
LIGC01000011
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
65074
65149
+
Asn
GTT
[ENA]
¡û
Identical group No.548402 (9 seq.)
>W131164248
ARAL01000121
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-J06 [ARAL]
53474
53399
-
Asn
GTT
[ENA]
¡û
>W131164254
ARAN01000041
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-C04 [ARAN]
681
756
+
Asn
GTT
[ENA]
¡û
>W131164284
ARAO01000189
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
3434
3359
-
Asn
GTT
[ENA]
¡û
>W131164323
ARAQ01000109
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-C20 [ARAQ]
4398
4323
-
Asn
GTT
[ENA]
¡û
>C181033392
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
595670
595745
+
Asn
GTT
-
¡û
>W141818944
JQLW01000006
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
356010
355935
-
Asn
GTT
[ENA]
¡û
>W2012196109
VWNB01000009
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
59144
59219
+
Asn
GTT
[ENA]
¡û
>W2130030619
JAFISZ010000011
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
6807
6882
+
Asn
GTT
[ENA]
¡û
>W1710081285
BDFD01000004
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
111992
112067
+
Asn
GTT
[ENA]
¡û
Identical group No.568136 (2 seq.)
>W2011964409
VBRY01000009
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
79820
79745
-
Asn
GTT
[ENA]
¡û
>W2011964429
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
60326
60401
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK