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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133562 (6 seq.)
>W131164482
ARAU01000029
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
16282
16368
+
Leu
TAA
[ENA]
¡û
>W1711583261
MNWZ01000055
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
15159
15073
-
Leu
TAA
[ENA]
¡û
>w018930
AATS01000003
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
197751
197663
-
Leu
TAA
[ENA]
¡û
>C181033353
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2318380
2318466
+
Leu
TAA
-
¡û
>W2010572252
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
196591
196505
-
Leu
TAA
[ENA]
¡û
>W1710759517
LIGC01000013
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
24367
24453
+
Leu
TAA
[ENA]
¡û
Identical group No.139331 (2 seq.)
>W2011964388
VBRY01000002
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
179767
179853
+
Leu
TAA
[ENA]
¡û
>W2011964440
VBRZ01000003
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
161940
161854
-
Leu
TAA
[ENA]
¡û
Identical group No.139448 (2 seq.)
>W2012196103
VWNB01000008
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
142635
142549
-
Leu
TAA
[ENA]
¡û
>W2012196126
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
88552
88466
-
Leu
TAA
[ENA]
¡û
Identical group No.170574 (1 seq.)
>W2011396415
RCFQ01000015
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
54789
54703
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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