This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537479 (14 seq.)
>W131164458
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
96753
96678
-
Val
TAC
[ENA]
¡û
>W1711583269
MNWZ01000104
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
8469
8544
+
Val
TAC
[ENA]
¡û
>W1711583271
MNWZ01000104
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
8791
8866
+
Val
TAC
[ENA]
¡û
>w018932
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
54893
54821
-
Val
TAC
[ENA]
¡û
>C181033365
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1932249
1932174
-
Val
TAC
-
¡û
>C181033367
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1931930
1931855
-
Val
TAC
-
¡û
>C181033390
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
543438
543513
+
Val
TAC
-
¡û
>W2010572255
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
248823
248898
+
Val
TAC
[ENA]
¡û
>W2011396408
RCFQ01000010
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
47623
47548
-
Val
TAC
[ENA]
¡û
>W2012196105
VWNB01000009
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
7452
7527
+
Val
TAC
[ENA]
¡û
>W2012196107
VWNB01000009
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
7769
7844
+
Val
TAC
[ENA]
¡û
>W2012196120
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
418672
418747
+
Val
TAC
[ENA]
¡û
>W2012196122
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
418993
419068
+
Val
TAC
[ENA]
¡û
>W1710759486
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
28581
28656
+
Val
TAC
[ENA]
¡û
Identical group No.552340 (9 seq.)
>W131164219
ARAK01000178
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-C09 [ARAK]
4119
4194
+
Val
TAC
[ENA]
¡û
>W131164251
ARAM01000092
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-E04 [ARAM]
9816
9741
-
Val
TAC
[ENA]
¡û
>WENV180294805
OBIZ01000587
[OBIZ] soil metagenome; soil
2223
2298
+
Val
TAC
[ENA]
¡û
>WENV180350248
OBLQ010000027
[OBLQ] soil metagenome; soil
17097
17022
-
Val
TAC
[ENA]
¡û
>WENV180582923
OCMR01127296
[OCMR] metagenome; diffuse fluid
131
206
+
Val
TAC
[ENA]
¡û
>W2011964380
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
216258
216333
+
Val
TAC
[ENA]
¡û
>W2011964382
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
208200
208125
-
Val
TAC
[ENA]
¡û
>W2011964458
VBRZ01000023
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
10095
10170
+
Val
TAC
[ENA]
¡û
>W2011964460
VBRZ01000023
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
2037
1962
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK