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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250208 (2 seq.)
>W2011964379
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
209845
209928
+
Leu
TAG
[ENA]
¡û
>W2011964457
VBRZ01000023
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
3682
3765
+
Leu
TAG
[ENA]
¡û
Identical group No.250229 (3 seq.)
>C181033364
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1938756
1938673
-
Leu
TAG
-
¡û
>W2012196104
VWNB01000009
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
835
918
+
Leu
TAG
[ENA]
¡û
>W2012196119
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
412214
412297
+
Leu
TAG
[ENA]
¡û
Identical group No.252203 (4 seq.)
>W131164457
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
103261
103178
-
Leu
TAG
[ENA]
¡û
>w018931
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
62649
62569
-
Leu
TAG
[ENA]
¡û
>W2010572254
JAAVJJ010000005
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
242316
242399
+
Leu
TAG
[ENA]
¡û
>W1710759485
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
22074
22157
+
Leu
TAG
[ENA]
¡û
Identical group No.258031 (1 seq.)
>W2011396407
RCFQ01000010
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
54140
54057
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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