This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.881294 (5 seq.)
>W1711583219
MNWY01000036
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
30143
30070
-
Gly
TCC
[ENA]
¡û
>C181033358
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
2522700
2522627
-
Gly
TCC
-
¡û
>C181033411
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
2286861
2286788
-
Gly
TCC
-
¡û
>W2012196113
VWNB01000010
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
92405
92332
-
Gly
TCC
[ENA]
¡û
>W2012196145
VWNC01000004
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
112644
112717
+
Gly
TCC
[ENA]
¡û
Identical group No.887462 (7 seq.)
>W131164485
ARAU01000038
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
2161
2234
+
Gly
TCC
[ENA]
¡û
>w018963
AATS01000024
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
15153
15226
+
Gly
TCC
[ENA]
¡û
>W2010572250
JAAVJJ010000004
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
346397
346470
+
Gly
TCC
[ENA]
¡û
>W2011964392
VBRY01000002
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
344514
344587
+
Gly
TCC
[ENA]
¡û
>W2011964469
VBRZ01000057
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
664
591
-
Gly
TCC
[ENA]
¡û
>W1710081313
BDFD01000043
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
367
294
-
Gly
TCC
[ENA]
¡û
>W1710759509
LIGC01000009
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
369
296
-
Gly
TCC
[ENA]
¡û
Identical group No.899314 (2 seq.)
>W131164329
ARAQ01000126
Zetaproteobacteria
zeta proteobacterium SCGC AB-602-C20 [ARAQ]
27459
27386
-
Gly
TCC
[ENA]
¡û
>W2130030622
JAFISZ010000031
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
2145
2072
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK