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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60840 (2 seq.)
>W2011964410
VBRY01000009
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
400
311
-
Ser
TGA
[ENA]
¡û
>W2011964430
VBRZ01000002
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
122316
122405
+
Ser
TGA
[ENA]
¡û
Identical group No.66998 (1 seq.)
>W2110504144
JAFITE010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFITE]
32349
32260
-
Ser
TGA
[ENA]
¡û
Identical group No.86000 (5 seq.)
>C181033345
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
592456
592544
+
Ser
TGA
-
¡û
>C181033424
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1697345
1697257
-
Ser
TGA
-
¡û
>W141818940
JQLW01000006
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
205432
205520
+
Ser
TGA
[ENA]
¡û
>W2012196088
VWNB01000004
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
205205
205293
+
Ser
TGA
[ENA]
¡û
>W2012196161
VWNC01000012
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
1109
1197
+
Ser
TGA
[ENA]
¡û
Identical group No.111511 (4 seq.)
>W131164465
ARAU01000010
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
55583
55496
-
Ser
TGA
[ENA]
¡û
>w018939
AATS01000004
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
7957
7868
-
Ser
TGA
[ENA]
¡û
>W2010572233
JAAVJJ010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
26527
26614
+
Ser
TGA
[ENA]
¡û
>W1710759493
LIGC01000003
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
75518
75605
+
Ser
TGA
[ENA]
¡û
Identical group No.125439 (1 seq.)
>W2011396420
RCFQ01000031
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
357
270
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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