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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525649 (50 seq.)
>W131164226
ARAK01000206
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-C09 [ARAK]
1746
1821
+
Ala
TGC
[ENA]
¡û
>W131164257
ARAN01000102
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-C04 [ARAN]
3867
3792
-
Ala
TGC
[ENA]
¡û
>W131164274
ARAO01000086
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
361
436
+
Ala
TGC
[ENA]
¡û
>W131164300
ARAO01000235
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
42113
42038
-
Ala
TGC
[ENA]
¡û
>W131164319
ARAP01000143
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-G06 [ARAP]
1583
1658
+
Ala
TGC
[ENA]
¡û
>C007873
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
808012
808087
+
Ala
TGC
[Ensembl]
¡û
>C007914
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
1462073
1461998
-
Ala
TGC
[Ensembl]
¡û
>w018945
AATS01000006
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
162430
162507
+
Ala
TGC
[ENA]
¡û
>w018943
AATS01000005
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
156988
156911
-
Ala
TGC
[ENA]
¡û
>W141261791
CCBA010000039
Bacillota
Bacillus sp. EB01 [CCBA]
1050
1125
+
Ala
TGC
[ENA]
¡û
>WENV183712935
PDWI01119307
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1755
1830
+
Ala
TGC
[ENA]
¡û
>WENV183713285
PDWI01132513
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
894
819
-
Ala
TGC
[ENA]
¡û
>WENV183721087
PDWJ01054828
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1522
1597
+
Ala
TGC
[ENA]
¡û
>WENV183722128
PDWJ01107436
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2466
2391
-
Ala
TGC
[ENA]
¡û
>WENV170006250
AMWB02010564
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
930
855
-
Ala
TGC
[ENA]
¡û
>WENV170615043
FUWD012847277
[FUWD] metagenome; unknown
85
160
+
Ala
TGC
[ENA]
¡û
>C181033336
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
354491
354566
+
Ala
TGC
-
¡û
>C181033338
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
363808
363883
+
Ala
TGC
-
¡û
>C181033417
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
1916407
1916332
-
Ala
TGC
-
¡û
>W141818935
JQLW01000005
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
424991
425066
+
Ala
TGC
[ENA]
¡û
>W141818961
JQLW01000012
Zetaproteobacteria
Ghiorsea bivora TAG-1 [JQLW]
88930
89005
+
Ala
TGC
[ENA]
¡û
>C09103729
CP001087
Thermodesulfobacteriota
Desulforapulum autotrophicum HRM2 [CP001087]
3971948
3971873
-
Ala
TGC
[Ensembl]
¡û
>SRA1025570
SRR035085.40656
454 Sequencing (SRP001806)
415
340
-
Ala
TGC
[SRA]
>W2010151758
CAADHO010000022
Thermodesulfobacteriota
Desulfoluna butyratoxydans [CAADHO]
2194
2119
-
Ala
TGC
[ENA]
¡û
>W2010302617
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
3276868
3276943
+
Ala
TGC
[ENA]
¡û
>W2010572264
JAAVJJ010000007
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
3388
3313
-
Ala
TGC
[ENA]
¡û
>W2010653201
JACAOA010000057
Bacillota
Aerococcaceae bacterium INB8 [JACAOA]
757
831
+
Ala
TGC
[ENA]
¡û
>SRA1037902
SRR035090.216132
454 Sequencing (SRP001811)
82
157
+
Ala
TGC
[SRA]
>SRA1038378
SRR035090.294150
454 Sequencing (SRP001811)
82
157
+
Ala
TGC
[SRA]
>W2011396424
RCFQ01000057
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
3645
3570
-
Ala
TGC
[ENA]
¡û
>W2011964424
VBRY01000020
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
2006
2081
+
Ala
TGC
[ENA]
¡û
>W2011964464
VBRZ01000040
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
2094
2169
+
Ala
TGC
[ENA]
¡û
>W2011985217
VDMB01000014
Thermodesulfobacteriota
Desulfobotulus sp. PAR22N [VDMB]
99347
99422
+
Ala
TGC
[ENA]
¡û
>W2012196077
VWNB01000001
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
52149
52074
-
Ala
TGC
[ENA]
¡û
>W2012196134
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
233872
233797
-
Ala
TGC
[ENA]
¡û
>W2012196136
VWNC01000002
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
217705
217630
-
Ala
TGC
[ENA]
¡û
>SRA1054704
SRR035099.190446
454 Sequencing (SRP001820)
259
184
-
Ala
TGC
[SRA]
>W2110200465
JACCEK010000005
Bacillota
Aerococcaceae bacterium DSM 111021 [JACCEK]
2887
2813
-
Ala
TGC
[ENA]
¡û
>W2110200467
JACCEK010000013
Bacillota
Aerococcaceae bacterium DSM 111021 [JACCEK]
235
163
-
Ala
TGC
[ENA]
¡û
>W2110200499
JACCEL010000057
Bacillota
Facklamia tabacinasalis DSM 104272 [JACCEL]
709
783
+
Ala
TGC
[ENA]
¡û
>W2110455410
JAEUAZ010000439
Gammaproteobacteria
Shewanella sp. RCRI7 [JAEUAZ]
314
240
-
Ala
TGC
[ENA]
¡û
>W2110504075
JAFISI010000003
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISI]
989
1064
+
Ala
TGC
[ENA]
¡û
>C231004670
AP024488
Thermodesulfobacteriota
Desulfoluna sp. ASN36 [AP024488]
5281416
5281491
+
Ala
TGC
-
¡û
>C231004672
AP024488
Thermodesulfobacteriota
Desulfoluna sp. ASN36 [AP024488]
5292279
5292354
+
Ala
TGC
-
¡û
>C161043027
CP012602
Bacillota
Bacillus sp. FJAT-18017 [CP012602]
1583261
1583336
+
Ala
TGC
[Ensembl]
¡û
>C161043087
CP012602
Bacillota
Bacillus sp. FJAT-18017 [CP012602]
163318
163243
-
Ala
TGC
[Ensembl]
¡û
>C131018039
FO203503
Thermodesulfobacteriota
Desulfobacula toluolica Tol2 [FO203503]
2314347
2314422
+
Ala
TGC
[Ensembl]
¡û
>W1710081277
BDFD01000003
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
38993
38918
-
Ala
TGC
[ENA]
¡û
>W1710081279
BDFD01000003
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
31866
31791
-
Ala
TGC
[ENA]
¡û
>W1710759527
LIGC01000031
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
3397
3322
-
Ala
TGC
[ENA]
¡û
Identical group No.552338 (3 seq.)
>W131164244
ARAL01000103
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-J06 [ARAL]
4949
5024
+
Ala
TGC
[ENA]
¡û
>WENV183715887
PDWI01270655
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
437
512
+
Ala
TGC
[ENA]
¡û
>W2130030617
JAFISZ010000007
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFISZ]
9113
9188
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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