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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Candidatius Mariprofundia
Anticodon = TTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.749195 (10 seq.)
>W131164452
ARAU01000005
Zetaproteobacteria
Mariprofundus ferrooxydans M34 [ARAU]
8518
8444
-
Gln
TTG
[ENA]
¡û
>W1711583259
MNWZ01000040
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_53_45 [MNWZ]
7338
7412
+
Gln
TTG
[ENA]
¡û
>w018952
AATS01000008
Zetaproteobacteria
Mariprofundus ferrooxydans PV-1 [AATS]
65406
65482
+
Gln
TTG
[ENA]
¡û
>C181033352
CP018799
Zetaproteobacteria
Mariprofundus aestuarium CP-5 [CP018799]
1969079
1969153
+
Gln
TTG
-
¡û
>C181033429
CP018800
Zetaproteobacteria
Mariprofundus ferrinatatus CP-8 [CP018800]
504723
504649
-
Gln
TTG
-
¡û
>W2010572226
JAAVJJ010000001
Candidatius Mariprofundia
Mariprofundus ferrooxydans O-1 [JAAVJJ]
917904
917978
+
Gln
TTG
[ENA]
¡û
>W2012196100
VWNB01000006
Candidatius Mariprofundia
Mariprofundus sp. KV [VWNB]
32222
32296
+
Gln
TTG
[ENA]
¡û
>W2012196125
VWNC01000001
Candidatius Mariprofundia
Mariprofundus sp. NF [VWNC]
384290
384216
-
Gln
TTG
[ENA]
¡û
>W1710081286
BDFD01000004
Zetaproteobacteria
Mariprofundus micogutta [BDFD]
28840
28766
-
Gln
TTG
[ENA]
¡û
>W1710759499
LIGC01000004
Zetaproteobacteria
Mariprofundus ferrooxydans [LIGC]
127524
127598
+
Gln
TTG
[ENA]
¡û
Identical group No.767796 (3 seq.)
>W1711583231
MNWY01000079
Zetaproteobacteria
Zetaproteobacteria bacterium CG1_02_49_23 [MNWY]
2818
2744
-
Gln
TTG
[ENA]
¡û
>W2011964383
VBRY01000001
Candidatius Mariprofundia
Mariprofundus sp. P3 [VBRY]
160408
160334
-
Gln
TTG
[ENA]
¡û
>W2011964446
VBRZ01000011
Candidatius Mariprofundia
Mariprofundus sp. P7 [VBRZ]
31211
31285
+
Gln
TTG
[ENA]
¡û
Identical group No.795895 (2 seq.)
>W2011396403
RCFQ01000007
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
90512
90586
+
Gln
TTG
[ENA]
¡û
>W2110504143
JAFITE010000002
Candidatius Mariprofundia
Mariprofundus ferrooxydans [JAFITE]
14517
14443
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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