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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = CAA
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74695 (2 seq.)
>W1610594327
LDXS01000009
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
62564
62475
-
Leu
CAA
[ENA]
¡û
>W1710713779
LDXS01000009
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
62564
62475
-
Leu
CAA
[ENA]
¡û
Identical group No.85971 (1 seq.)
>C08003792
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1093884
1093970
+
Leu
CAA
[Ensembl]
¡û
Identical group No.101118 (2 seq.)
>W1710856771
LLZP01000035
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
131886
131973
+
Leu
CAA
[ENA]
¡û
>W1610719152
LLZP01000035
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
131886
131973
+
Leu
CAA
[ENA]
¡û
Identical group No.103444 (7 seq.)
>WENV181232340
OFEN01000083
[OFEN] coral metagenome; NA
20139
20054
-
Leu
CAA
[ENA]
¡û
>WENV181233218
OFES01000007
[OFES] coral metagenome; NA
27402
27317
-
Leu
CAA
[ENA]
¡û
>WENV181237097
OFFA01071825
[OFFA] coral metagenome; NA
696
611
-
Leu
CAA
[ENA]
¡û
>WENV181303879
OFHR01000388
[OFHR] coral metagenome; NA
2862
2947
+
Leu
CAA
[ENA]
¡û
>W1810062284
PDNZ01000005
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
77360
77275
-
Leu
CAA
[ENA]
¡û
>C231534738
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
973858
973773
-
Leu
CAA
-
¡û
>C231534784
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
1048201
1048116
-
Leu
CAA
-
¡û
Identical group No.104083 (1 seq.)
>C005320
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
904353
904266
-
Leu
CAA
[Ensembl]
¡û
Identical group No.109844 (1 seq.)
>W141803638
JPGV01000025
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
80144
80059
-
Leu
CAA
[ENA]
¡û
Identical group No.112290 (2 seq.)
>w006951
AAIC01000015
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
12394
12310
-
Leu
CAA
[ENA]
¡û
>C08003644
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1736571
1736658
+
Leu
CAA
[Ensembl]
¡û
Identical group No.118744 (2 seq.)
>W1710887484
LMYZ01000063
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
44937
45022
+
Leu
CAA
[ENA]
¡û
>W1610748184
LMYZ01000063
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
44937
45022
+
Leu
CAA
[ENA]
¡û
Identical group No.118984 (2 seq.)
>w007202
AAIK01000016
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
33725
33812
+
Leu
CAA
[ENA]
¡û
>C08007701
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1966830
1966917
+
Leu
CAA
[Ensembl]
¡û
Identical group No.119224 (1 seq.)
>C211198524
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
1608141
1608056
-
Leu
CAA
-
¡û
Identical group No.131449 (3 seq.)
>W1711626080
MPJE01000030
Chlorobiota
Chlorobium sp. KB01 [MPJE]
21367
21281
-
Leu
CAA
[ENA]
¡û
>w018051
AASE01000020
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
22930
23018
+
Leu
CAA
[ENA]
¡û
>W2010532742
JAAORA010000008
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
49122
49208
+
Leu
CAA
[ENA]
¡û
Identical group No.133741 (4 seq.)
>w007161
AAIJ01000005
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
107370
107282
-
Leu
CAA
[ENA]
¡û
>C08007179
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
921478
921395
-
Leu
CAA
[Ensembl]
¡û
>C181068780
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
1502921
1503007
+
Leu
CAA
-
¡û
>W1810062167
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
1611112
1611198
+
Leu
CAA
[ENA]
¡û
Identical group No.133743 (4 seq.)
>C006612
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
1099746
1099660
-
Leu
CAA
[Ensembl]
¡û
>w006100
AAHJ01000006
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
71126
71214
+
Leu
CAA
[ENA]
¡û
>C08003521
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
923071
922988
-
Leu
CAA
[Ensembl]
¡û
>W09102638
AAIB01000003
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
108953
108867
-
Leu
CAA
[ENA]
¡û
Identical group No.134365 (8 seq.)
>C018247
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1239038
1239124
+
Leu
CAA
[Ensembl]
¡û
>WENV183812112
PYLN01000055
[PYLN] freshwater metagenome; meromictic lake
4340
4256
-
Leu
CAA
[ENA]
¡û
>W09103364
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
51557
51643
+
Leu
CAA
[ENA]
¡û
>W2011502927
RXYJ01000001
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
142417
142333
-
Leu
CAA
[ENA]
¡û
>W2011502997
RXYK01000013
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
29229
29145
-
Leu
CAA
[ENA]
¡û
>W2012093217
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
1344388
1344472
+
Leu
CAA
[ENA]
¡û
>W2012440415
WUBZ01000026
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
12128
12212
+
Leu
CAA
[ENA]
¡û
>C201100882
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
788971
788887
-
Leu
CAA
-
¡û
Identical group No.135602 (5 seq.)
>W1711167315
LVWG01000027
Chlorobiota
Pelodictyon luteolum [LVWG]
19636
19550
-
Leu
CAA
[ENA]
¡û
>C016765
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
853060
852974
-
Leu
CAA
[Ensembl]
¡û
>WENV170613737
FUWD012818017
[FUWD] metagenome; unknown
19777
19863
+
Leu
CAA
[ENA]
¡û
>W2011609988
SJPA01000006
Chlorobiota
Chlorobium sp. N1 [SJPA]
34959
35045
+
Leu
CAA
[ENA]
¡û
>W1610977646
LVWG01000027
Chlorobiota
Pelodictyon luteolum [LVWG]
19636
19550
-
Leu
CAA
[ENA]
¡û
Identical group No.144876 (6 seq.)
>W1710858979
LMBR01000014
Chlorobiota
Chlorobium limicola [LMBR]
20727
20813
+
Leu
CAA
[ENA]
¡û
>WENV170625128
FUWD013192081
[FUWD] metagenome; unknown
6881
6795
-
Leu
CAA
[ENA]
¡û
>WENV170625130
FUWD013192082
[FUWD] metagenome; unknown
183
97
-
Leu
CAA
[ENA]
¡û
>WENV170633385
FUWD013395293
[FUWD] metagenome; unknown
6881
6795
-
Leu
CAA
[ENA]
¡û
>WENV170633387
FUWD013395294
[FUWD] metagenome; unknown
183
97
-
Leu
CAA
[ENA]
¡û
>W1610721325
LMBR01000014
Chlorobiota
Chlorobium limicola [LMBR]
20727
20813
+
Leu
CAA
[ENA]
¡û
Identical group No.148110 (2 seq.)
>W1610552296
JYPE01000004
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
129436
129350
-
Leu
CAA
[ENA]
¡û
>W1710662961
JYPE01000004
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
129436
129350
-
Leu
CAA
[ENA]
¡û
Identical group No.150470 (7 seq.)
>W1711136078
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
668948
668864
-
Leu
CAA
[ENA]
¡û
>C171060563
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
1659509
1659593
+
Leu
CAA
-
¡û
>C007039
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
736155
736072
-
Leu
CAA
[Ensembl]
¡û
>W2011543748
SDGU01000012
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
88086
88170
+
Leu
CAA
[ENA]
¡û
>W2011980185
VDCH01000035
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
347
431
+
Leu
CAA
[ENA]
¡û
>C231486382
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
1377587
1377671
+
Leu
CAA
-
¡û
>W1610947198
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
668948
668864
-
Leu
CAA
[ENA]
¡û
Identical group No.150487 (2 seq.)
>C171114004
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1472841
1472927
+
Leu
CAA
-
¡û
>WENV183513467
OMKS01005218
[OMKS] sediment metagenome; hot spring sediment
2101
2017
-
Leu
CAA
[ENA]
¡û
Identical group No.150606 (1 seq.)
>C08003596
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
1425502
1425586
+
Leu
CAA
[Ensembl]
¡û
Identical group No.159372 (2 seq.)
>W1710856711
LLZO01000018
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
8319
8405
+
Leu
CAA
[ENA]
¡û
>W1610719092
LLZO01000018
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
8319
8405
+
Leu
CAA
[ENA]
¡û
Identical group No.159834 (4 seq.)
>W1810062224
PDNY01000010
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
39934
40020
+
Leu
CAA
[ENA]
¡û
>W2010640185
JABVZQ010000007
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
83182
83268
+
Leu
CAA
[ENA]
¡û
>W2110315959
JADGIH010000007
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
65623
65537
-
Leu
CAA
[ENA]
¡û
>W2110316004
JADGII010000010
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
83244
83330
+
Leu
CAA
[ENA]
¡û
Identical group No.169103 (1 seq.)
>C171049452
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1455207
1455293
+
Leu
CAA
-
¡û
Identical group No.170694 (1 seq.)
>W2011980228
VDCI01000009
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
16549
16635
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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