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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlorobiota
Anticodon = CCT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320789 (2 seq.)
>W1710856772
LLZP01000035
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
49339
49263
-
Arg
CCT
[ENA]
¡û
>W1610719153
LLZP01000035
Chlorobiota
Chlorobi bacterium OLB6 [LLZP]
49339
49263
-
Arg
CCT
[ENA]
¡û
Identical group No.342979 (1 seq.)
>C08003790
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
859303
859379
+
Arg
CCT
[Ensembl]
¡û
Identical group No.384926 (1 seq.)
>W141803623
JPGV01000009
Chlorobiota
[Candidatus Thermochlorobacteriaceae] bacterium GBChlB GBChlB [JPGV]
39863
39789
-
Arg
CCT
[ENA]
¡û
Identical group No.389308 (4 seq.)
>WENV180014901
FQKF010205668
[FQKF] soil metagenome; Soil
129
55
-
Arg
CCT
[ENA]
¡û
>WENV170700704
LJSS01000279
[LJSS] hot springs metagenome; water from Lobios Hot Spring
4588
4664
+
Arg
CCT
[ENA]
¡û
>W1610594302
LDXS01000001
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
1010126
1010050
-
Arg
CCT
[ENA]
¡û
>W1710713754
LDXS01000001
Chlorobiota
Chlorobi bacterium NICIL-2 [LDXS]
1010126
1010050
-
Arg
CCT
[ENA]
¡û
Identical group No.444269 (2 seq.)
>W1710856717
LLZO01000073
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
10
86
+
Arg
CCT
[ENA]
¡û
>W1610719098
LLZO01000073
Chlorobiota
Chlorobi bacterium OLB5 [LLZO]
10
86
+
Arg
CCT
[ENA]
¡û
Identical group No.446909 (2 seq.)
>W1710887511
LMYZ01000219
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
39364
39442
+
Arg
CCT
[ENA]
¡û
>W1610748211
LMYZ01000219
Chlorobiota
Chlorobi bacterium OLB7 [LMYZ]
39364
39442
+
Arg
CCT
[ENA]
¡û
Identical group No.450350 (1 seq.)
>C211198507
CP065014
Chlorobiota
Chlorobi bacterium [CP065014]
1351671
1351745
+
Arg
CCT
-
¡û
Identical group No.526994 (5 seq.)
>W1711626074
MPJE01000019
Chlorobiota
Chlorobium sp. KB01 [MPJE]
53982
53909
-
Arg
CCT
[ENA]
¡û
>w018026
AASE01000003
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
2698
2621
-
Arg
CCT
[ENA]
¡û
>w007195
AAIK01000010
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
3595
3518
-
Arg
CCT
[ENA]
¡û
>C08007708
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
2791223
2791150
-
Arg
CCT
[Ensembl]
¡û
>W2010532708
JAAORA010000002
Chlorobiota
Chlorobium sp. BLA1 [JAAORA]
133574
133647
+
Arg
CCT
[ENA]
¡û
Identical group No.538421 (3 seq.)
>w007145
AAIJ01000002
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
18639
18562
-
Arg
CCT
[ENA]
¡û
>C08007147
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
281143
281216
+
Arg
CCT
[Ensembl]
¡û
>W1810062188
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2122866
2122793
-
Arg
CCT
[ENA]
¡û
Identical group No.538437 (40 seq.)
>W1710858986
LMBR01000060
Chlorobiota
Chlorobium limicola [LMBR]
18423
18350
-
Arg
CCT
[ENA]
¡û
>W1711167303
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
81438
81365
-
Arg
CCT
[ENA]
¡û
>C171049440
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
250717
250790
+
Arg
CCT
-
¡û
>C171113988
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
249480
249553
+
Arg
CCT
-
¡û
>C006618
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
194001
193926
-
Arg
CCT
[Ensembl]
¡û
>C016750
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
2205313
2205241
-
Arg
CCT
[Ensembl]
¡û
>C018255
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1809471
1809396
-
Arg
CCT
[Ensembl]
¡û
>w006973
AAIC01000063
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
9933
9856
-
Arg
CCT
[ENA]
¡û
>w006098
AAHJ01000005
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
130663
130740
+
Arg
CCT
[ENA]
¡û
>WENV181232329
OFEN01000053
[OFEN] coral metagenome; NA
16348
16421
+
Arg
CCT
[ENA]
¡û
>WENV181232341
OFEN01000087
[OFEN] coral metagenome; NA
4065
4138
+
Arg
CCT
[ENA]
¡û
>WENV181233213
OFES01000006
[OFES] coral metagenome; NA
175563
175636
+
Arg
CCT
[ENA]
¡û
>WENV181233224
OFES01000010
[OFES] coral metagenome; NA
139989
140062
+
Arg
CCT
[ENA]
¡û
>WENV181303847
OFHR01000003
[OFHR] coral metagenome; NA
15900
15827
-
Arg
CCT
[ENA]
¡û
>WENV181303873
OFHR01000086
[OFHR] coral metagenome; NA
7725
7652
-
Arg
CCT
[ENA]
¡û
>C08003508
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
2556034
2555961
-
Arg
CCT
[Ensembl]
¡û
>C08003628
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
298271
298347
+
Arg
CCT
[Ensembl]
¡û
>WENV183513252
OMKS01003648
[OMKS] sediment metagenome; hot spring sediment
7703
7776
+
Arg
CCT
[ENA]
¡û
>WENV170613589
FUWD012814623
[FUWD] metagenome; unknown
8196
8269
+
Arg
CCT
[ENA]
¡û
>WENV170623731
FUWD013170141
[FUWD] metagenome; unknown
5228
5155
-
Arg
CCT
[ENA]
¡û
>WENV170632009
FUWD013377294
[FUWD] metagenome; unknown
5228
5155
-
Arg
CCT
[ENA]
¡û
>C181068764
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
273494
273567
+
Arg
CCT
-
¡û
>W09102641
AAIB01000004
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
99764
99839
+
Arg
CCT
[ENA]
¡û
>W09103346
AAJD01000003
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
190492
190567
+
Arg
CCT
[ENA]
¡û
>W1810062227
PDNY01000011
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
2425
2352
-
Arg
CCT
[ENA]
¡û
>W1810062259
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
246611
246538
-
Arg
CCT
[ENA]
¡û
>W2010640179
JABVZQ010000005
Chlorobiota
Prosthecochloris sp. DSM 1685 [JABVZQ]
51186
51113
-
Arg
CCT
[ENA]
¡û
>W2011502935
RXYJ01000002
Chlorobiota
Chlorobium phaeovibrioides GrKhr17 [RXYJ]
79769
79694
-
Arg
CCT
[ENA]
¡û
>W2011502965
RXYK01000002
Chlorobiota
Chlorobium phaeovibrioides BrKhr17 [RXYK]
119605
119680
+
Arg
CCT
[ENA]
¡û
>W2011609976
SJPA01000002
Chlorobiota
Chlorobium sp. N1 [SJPA]
119394
119319
-
Arg
CCT
[ENA]
¡û
>W2011980214
VDCI01000006
Chlorobiota
Prosthecochloris vibrioformis DSM 260 [VDCI]
45703
45776
+
Arg
CCT
[ENA]
¡û
>W2012093224
VMRG01000001
Chlorobiota
Chlorobium phaeovibrioides GrTcv12 [VMRG]
1897551
1897477
-
Arg
CCT
[ENA]
¡û
>W2012440385
WUBZ01000004
Chlorobiota
Chlorobium phaeovibrioides ZM [WUBZ]
45554
45629
+
Arg
CCT
[ENA]
¡û
>W2110315945
JADGIH010000005
Chlorobiota
Prosthecochloris ethylica N2 [JADGIH]
123849
123922
+
Arg
CCT
[ENA]
¡û
>W2110315988
JADGII010000005
Chlorobiota
Prosthecochloris ethylica N3 [JADGII]
33057
32984
-
Arg
CCT
[ENA]
¡û
>C201100843
CP041698
Chlorobiota
Chlorobium phaeovibrioides PhvTcv-s14 [CP041698]
226045
226120
+
Arg
CCT
-
¡û
>C231534723
CP110622
Chlorobiota
Prosthecochloris sp. SCSIO W1103 [CP110622]
2565508
2565435
-
Arg
CCT
-
¡û
>C231534769
CP110623
Chlorobiota
Prosthecochloris sp. SCSIO W1101 [CP110623]
2774383
2774310
-
Arg
CCT
-
¡û
>W1610721332
LMBR01000060
Chlorobiota
Chlorobium limicola [LMBR]
18423
18350
-
Arg
CCT
[ENA]
¡û
>W1610977634
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
81438
81365
-
Arg
CCT
[ENA]
¡û
Identical group No.547993 (1 seq.)
>C005286
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
164847
164922
+
Arg
CCT
[Ensembl]
¡û
Identical group No.608918 (2 seq.)
>W1610552321
JYPE01000015
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
77874
77947
+
Arg
CCT
[ENA]
¡û
>W1710662986
JYPE01000015
Chlorobiota
Chlorobi bacterium OLB4 [JYPE]
77874
77947
+
Arg
CCT
[ENA]
¡û
Identical group No.620043 (7 seq.)
>W1711136066
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
115675
115748
+
Arg
CCT
[ENA]
¡û
>C171060575
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
2410284
2410211
-
Arg
CCT
-
¡û
>C007033
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
1923656
1923584
-
Arg
CCT
[Ensembl]
¡û
>W2011543769
SDGU01000061
Chlorobiota
Chlorobaculum sp. 24CR [SDGU]
47836
47909
+
Arg
CCT
[ENA]
¡û
>W2011980148
VDCH01000002
Chlorobiota
Chlorobaculum thiosulfatiphilum DSM 249 [VDCH]
101823
101750
-
Arg
CCT
[ENA]
¡û
>C231486397
CP104202
Chlorobiota
Chlorobaculum sp. MV4-Y [CP104202]
1901114
1901041
-
Arg
CCT
-
¡û
>W1610947186
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
115675
115748
+
Arg
CCT
[ENA]
¡û
Identical group No.620711 (1 seq.)
>C08003605
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
2101382
2101309
-
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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